PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma425g00210.1
Common NameZOSMA_425G00210
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family LBD
Protein Properties Length: 174aa    MW: 19336.9 Da    PI: 9.6801
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma425g00210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260111.84.8e-3518117199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       aCa+Ck++r++C ++C+lapyfp++++++f++vhk+FG+snv+k++ a+ ++e r +a++s+v+eAe+r++dP++G++g + +l+++ ++l a
  Zosma425g00210.1  18 ACASCKHQRKRCGPKCILAPYFPSARSRQFQAVHKVFGVSNVSKMICAVGTHEeRYRATQSMVWEAEWRIKDPISGCYGEYIRLRREFDRLVA 110
                       7************************************************66665************************************999 PP

            DUF260  93 elallke 99 
                         +++++
  Zosma425g00210.1 111 ACSTTQH 117
                       9888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.70617119IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-3418116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MNRYISTTAV SAATGHHACA SCKHQRKRCG PKCILAPYFP SARSRQFQAV HKVFGVSNVS  60
KMICAVGTHE ERYRATQSMV WEAEWRIKDP ISGCYGEYIR LRREFDRLVA ACSTTQHNNN  120
IDHNFTGGVI SQSQIYSRHG GGETIRYADP QPMLLGVNLK KGGGGDTWQR GDM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-241910812100LOB family transfactor Ramosa2.1
5ly0_B2e-241910812100LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279241.12e-37PREDICTED: LOB domain-containing protein 2
SwissprotQ9LNB93e-33LBD2_ARATH; LOB domain-containing protein 2
TrEMBLA0A0K9P4K81e-128A0A0K9P4K8_ZOSMR; Uncharacterized protein
STRINGXP_010279241.16e-37(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-35LOB domain-containing protein 2