PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma40g00450.1
Common NameZOSMA_40G00450
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 479aa    MW: 52329.4 Da    PI: 7.7556
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma40g00450.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.4e-11142166226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      +++ C +++ t tCk+Gd+CkF H+
  Zosma40g00450.1 142 GEKDCAHYMLTRTCKFGDTCKFDHP 166
                      7889********************9 PP
2zf-CCCH27.94e-09194219227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      + + C++f++t  Ck+G +CkF+H++
  Zosma40g00450.1 194 GVPDCPYFMKTEKCKFGYSCKFNHPK 219
                      6899********************96 PP
3zf-CCCH35.32e-11238262327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+f+++tG+Ck+G++C F+H++
  Zosma40g00450.1 238 EPICSFYSKTGICKFGANCIFNHPK 262
                      799********************96 PP
4zf-CCCH375.8e-12301324225
                      -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                      ++ +C+f+++tG CkyG+rC+F+H
  Zosma40g00450.1 301 GEQECSFYLKTGSCKYGARCRFNH 324
                      6789******************** PP
5zf-CCCH42.97.9e-14377399426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C+++++tG Ck+Gd+CkF+H+
  Zosma40g00450.1 377 PPCDYYMKTGACKFGDQCKFHHP 399
                      79********************9 PP
6zf-CCCH33.66.6e-11429454227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +t +C+f+++tGtCky + CkF H+p
  Zosma40g00450.1 429 GTIICPFYLKTGTCKYDAACKFDHPP 454
                      6889********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.188140168IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-4140167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5141167IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8142166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404192220IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013192219IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-7194219IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5197221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.643235263IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-6235262IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8238262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6238263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-5240261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145299327IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-6299326IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9301324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6302326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5305325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-7373401IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004373401IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-8373400IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-11377399IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-6378399IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6427454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981428455IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8429454IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5429454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-5430452IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MASNQHSKYI TAASSSRYTN VAPGTDAYTR YLGEESARYA SMDMASSSTL NLGVGTDVGV  60
NAYMRSIWGV PSSVEDGIGA MGPVTDSMLG IKRQVEALYY HNALGTHNSI GHSEALYSTN  120
SFAKRPRVES ASLLPIYPQR PGEKDCAHYM LTRTCKFGDT CKFDHPLWVP EGGIPDWKEV  180
PVVSSSDLLP ERQGVPDCPY FMKTEKCKFG YSCKFNHPKD KAKTEIIDPS TLPERPTEPI  240
CSFYSKTGIC KFGANCIFNH PKDLHSLATG SNTNTSVNDA INVPFFPALL HNTKGLPIRP  300
GEQECSFYLK TGSCKYGARC RFNHQDWNVA AGLTGQTMYQ IPGAMHSYAS LIPGIDPSLT  360
QTLAVVPAVY PHRPHAPPCD YYMKTGACKF GDQCKFHHPV DRSASITYAT QISHPAVKLT  420
LAGLPRHEGT IICPFYLKTG TCKYDAACKF DHPPPGELMT MPSNEGAISV DLTKTETS*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260864.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-155C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0K9P5E50.0A0A0K9P5E5_ZOSMR; Zinc finger CCCH domain-containing protein 37
STRINGXP_010260864.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-157floral homeotic protein (HUA1)