PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma40g00370.1
Common NameZOSMA_40G00370
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 301aa    MW: 32022.2 Da    PI: 7.3932
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma40g00370.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.7e-1393139354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+ +ErrRR+riNs +++Lr llP+       K++Ka++L ++++ +k+L
  Zosma40g00370.1  93 KSHSDAERRRRERINSHLSTLRGLLPTT-----VKMDKAAVLAEVIKRMKQL 139
                      58*************************9.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.6590139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.13E-1093142No hitNo description
PfamPF000101.5E-1093139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1293141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1293143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1196145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048735.36E-5191261No hitNo description
Gene3DG3DSA:3.30.70.2603.8E-5191238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MVMAVVVLLM GYAVITEGLI MVDLDFGGGG EVGGRGGGGN SSSGRGVVGP ATLVLDREKG  60
ELVKAPVRIG RRGVGGSSTS GGGSEVRAAQ ALKSHSDAER RRRERINSHL STLRGLLPTT  120
VKMDKAAVLA EVIKRMKQLK RAAAKEVSET CTALNIPSCT DEVQVENYGD DDEEEEEEEE  180
EKKNVVKMKA SISCDDRPEI FSDLRRIFET LRLRMVSSEI STMGTRLKTV FVLSTADDNG  240
SGGAEGRELI INSVRNSLRS VVEGISTTSP PSHPDSSPAT SRSGKKRKFS STVESMSCSS  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13238GGRGGGG
298103ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P3470.0A0A0K9P347_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-26bHLH family protein