PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma40g00320.1
Common NameZOSMA_40G00320
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family TCP
Protein Properties Length: 399aa    MW: 43148 Da    PI: 6.2217
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma40g00320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.62.7e-35491522105
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa 95 
                      + +kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i+el +++  ++s + ++s +++++++   + ++++ 
  Zosma40g00320.1  49 TSRKDRHSKVLTAKGPRDRRVRLSANTAIQFYDVQDRLGYDRPSKAVDWLIKNAKASIDELEKLPPWHPSTMADVSLQQQQQQQPMLSTQQQEL 142
                      679*************************************************************777776666666666666443334444443 PP

              TCP  96 kskksqksaa 105
                        +++++ aa
  Zosma40g00320.1 143 MMNSDDTAAA 152
                      3333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-3249153IPR005333Transcription factor, TCP
PROSITE profilePS5136932.44451109IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGESHRDTTH QNHHILLHST PANSSYRLGV AKGGGEIVEV KGGHIVRSTS RKDRHSKVLT  60
AKGPRDRRVR LSANTAIQFY DVQDRLGYDR PSKAVDWLIK NAKASIDELE KLPPWHPSTM  120
ADVSLQQQQQ QQPMLSTQQQ ELMMNSDDTA AAETSDSTAY NNAFGGGGGA AGSTSTSFLP  180
SPVLDQSEYS IADTIKSFFP TTGATASSSN APIGLYAQDL RLSLQSFQQD PILLHHHNHN  240
HQNHQNHNQQ SNTTVSEHPF FSSSSSSSTH IPMVYDTIPL VPWHTNGGGV EDDGGGGGGG  300
YGYNNFPSPQ GMAAMHAGVG QNSFYAPQRG TLQSSDSPYI RAWMDPTLST STAGFGGFSR  360
FRIPARIQGD LEEEEEEEDD GHDAVSDKPS QPPASSHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2156109154Putative transcription factor PCF6
5zkt_B5e-2156109154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082737.14e-92transcription factor TCP4-like
RefseqXP_011082738.14e-92transcription factor TCP4-like
TrEMBLA0A0K9P3420.0A0A0K9P342_ZOSMR; TCP family transcription factor TCP4
STRINGXP_009630327.17e-84(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.39e-46TCP family protein