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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Zosma401g00140.1 |
| Common Name | ZOSMA_401G00140 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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| Family |
SRS |
| Protein Properties |
Length: 272aa MW: 30350.6 Da PI: 8.3351 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zosma401g00140.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 199.1 | 1.3e-61 | 71 | 236 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...kskkqsalsstklss 93
+++CqdCGnqakkdC ++RCRtCCks++f+C+thvkstWvp+a+rre+q+ aa+ +++a+ +++ sk++r l ++++++++ss + +
Zosma401g00140.1 71 AAITCQDCGNQAKKDCLYRRCRTCCKSQEFNCTTHVKSTWVPTARRREKQKISAAMVTTSAS-TTSGGSKKQRLLvdaSNNSHTSTSSHSFDT 162
5689*********************************************9998887776665.455556666655343333333333333333 PP
DUF702 94 aeskkeletss.............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
++s+++ ++++ lP +++++a+f+cvrv+s+ddge+e+aYq+ v+i Gh+fkG+LydqG+++
Zosma401g00140.1 163 SSSHHQQQQRRrshhhqdagfrenLPLQIQAPALFKCVRVTSIDDGEDEYAYQAMVNIRGHMFKGFLYDQGIDN 236
33332222222567899******************************************************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MFQRYRLWQQ QQEEEEVENP NLNLNPNLSS SVNPNFGSVI LNDPSSRVGG AITTAAMFPP 60
CNIVSSTSVA AAITCQDCGN QAKKDCLYRR CRTCCKSQEF NCTTHVKSTW VPTARRREKQ 120
KISAAMVTTS ASTTSGGSKK QRLLVDASNN SHTSTSSHSF DTSSSHHQQQ QRRRSHHHQD 180
AGFRENLPLQ IQAPALFKCV RVTSIDDGED EYAYQAMVNI RGHMFKGFLY DQGIDNPGEE 240
EYTRTRSSNN TTLQNLSELH LGGVSGTRWE R*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 1e-46 | Lateral root primordium (LRP) protein-related |
