PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma400g00040.1
Common NameZOSMA_400G00040
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 347aa    MW: 37865.7 Da    PI: 5.2711
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma400g00040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.42.9e-33161218259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vk+s+fprsYYrCt   C vkk+vers++dp++v++tYeg+H+h 
  Zosma400g00040.1 161 EDGYRWRKYGQKAVKNSPFPRSYYRCTNLMCGVKKRVERSSSDPTIVVTTYEGQHTHA 218
                       8********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-34145220IPR003657WRKY domain
SuperFamilySSF1182902.62E-28152220IPR003657WRKY domain
PROSITE profilePS5081130.779155220IPR003657WRKY domain
SMARTSM007741.1E-39160219IPR003657WRKY domain
PfamPF031063.4E-26161217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MMMAKRDEVE LENREKIQIT GSSFVGGIGG GGPGERGFLD EVDSKSSFLD LLRCGGSEAQ  60
VQQPLVSSHA PPARPVVASP PPDSTSVSSS SVEASGSTTC ADQAKSAVTD EDEEEEDEDG  120
GGKNNTLKRT AAKMKSKKVQ KKREREPRFA FMTKSEVDHL EDGYRWRKYG QKAVKNSPFP  180
RSYYRCTNLM CGVKKRVERS SSDPTIVVTT YEGQHTHANP AVSRGGQAIC AASLSSPFSS  240
SAPLLNPTQQ FHYPYSLLPH HNQLDTPLYS PMTVPLPQMD DFTWFDSTAD TTFDAIAGAN  300
YDPVSNYNNN DDNNNNNYTH GSLLGGDDGL LQDLVPSDVR REDRKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-28150221778Probable WRKY transcription factor 4
2lex_A6e-28150221778Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P5M30.0A0A0K9P5M3_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-43WRKY DNA-binding protein 57