PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zosma3g01640.1

Common Name

ZOSMA_3G01640

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

LBD

Protein Properties

Length: 66aa MW: 7490.48 Da PI: 5.5618

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma3g01640.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	44.1	5.7e-14	1	56	45	100
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +l++lp +ere+a++s+ eA r++ PvyG vg+i++lq++++++++el+++++e Zosma3g01640.1 1 MLQKLPYNEREEAANSISHEAYLRVQHPVYGIVGTITNLQEEIHRKQQELVRIEAE 56 799***********************************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.2E-11	1	53	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	10.411	1	57	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
MLQKLPYNER EEAANSISHE AYLRVQHPVY GIVGTITNLQ EEIHRKQQEL VRIEAEIAIY 60 TAGNL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010927283.2	3e-16	LOW QUALITY PROTEIN: LOB domain-containing protein 24-like
TrEMBL	A0A0K9P676	7e-39	A0A0K9P676_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP27534	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	1e-14	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Zosma3g01640.1