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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma3g01570.1 | ||||||||
Common Name | ZOSMA_3G01570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 212aa MW: 24054.1 Da PI: 8.4591 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.2 | 2.2e-06 | 7 | 55 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + ++ rE++ Rd++N+ f +L + l ++ +sKa+iL A++ +++L Zosma3g01570.1 7 KIHKSHREKQKRDHLNEVFLKLERTLEDV----KQNNSKASILNDATKILRDL 55 567899*********************97....699************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-8 | 4 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.357 | 5 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-11 | 6 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.60E-4 | 6 | 55 | No hit | No description |
Pfam | PF00010 | 1.4E-4 | 7 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MTEITKKIHK SHREKQKRDH LNEVFLKLER TLEDVKQNNS KASILNDATK ILRDLIVQVE 60 SLRKENANLI TETQYVTTER DELKDEVSTL WTELDKLKNE LSQMGHVDPS WYNVTNKAAS 120 LVPVDNSIES HSYLGLRIKT SVLNPPYVTR PHARYPNSLD SRPQRPLFQH MIATIGPQSS 180 NSSTSTTICN NSTTGSREME GSSSPRELQL L* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9P3X1 | 1e-153 | A0A0K9P3X1_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 8e-32 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma3g01570.1 |