PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma3g01560.1 | ||||||||
Common Name | ZOSMA_3G01560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 181aa MW: 20504.5 Da PI: 9.468 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.1 | 3.7e-09 | 117 | 157 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r RR+ri +++ L++l+P +K++ a++L +A++Y+k+L+ Zosma3g01560.1 117 RHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKYLK 157 89*****************87.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.199 | 107 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-13 | 108 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-14 | 111 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-13 | 113 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-6 | 117 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.30E-6 | 130 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010500 | Biological Process | transmitting tissue development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048462 | Biological Process | carpel formation | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MDFEFFNPSN QEHMELVNMM MQMENLPEFS EPTATTTTTL LHPSVLDFTN GSITIPPTSP 60 PLAGHNQKSS TESTVSMREM IFRIAAMQPV YIDPETIKPP KRRNVKISKD PQSVSARHRR 120 ERISERIRIL QRLVPGGTKM DTASMLDEAI HYVKYLKTQV QSLERVATII PTTSTYRSNP 180 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009417818.1 | 3e-58 | PREDICTED: transcription factor HEC2-like | ||||
Swissprot | Q9FHA7 | 1e-45 | HEC1_ARATH; Transcription factor HEC1 | ||||
TrEMBL | A0A0K9P3W7 | 1e-129 | A0A0K9P3W7_ZOSMR; BHLH transcription factor-like | ||||
STRING | Aquca_010_00306.1 | 2e-57 | (Aquilegia coerulea) | ||||
STRING | GSMUA_Achr9P15380_001 | 1e-57 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3103 | 36 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67060.1 | 2e-40 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma3g01560.1 |