PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma39g00490.1
Common NameZOSMA_39G00490
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 656aa    MW: 72525 Da    PI: 6.5817
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma39g00490.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.47.2e-29327385259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK  kg+++prsYYrCt a gCpv+k+v+r+aed +++++tYeg+H h+
  Zosma39g00490.1 327 NDGCQWRKYGQKISKGNPCPRSYYRCTVAaGCPVRKQVQRCAEDMTILTTTYEGKHSHH 385
                      8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-30311387IPR003657WRKY domain
SuperFamilySSF1182901.01E-25321387IPR003657WRKY domain
PROSITE profilePS5081128.552321387IPR003657WRKY domain
SMARTSM007745.8E-34326386IPR003657WRKY domain
PfamPF031062.6E-25327385IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MEKHAVFGEI YYIIKKNSSK ARPNNFLLSC SSFFFNSSSC CFIFEPIMKE ILPKADEEEQ  60
QSIQGRNLEI SSNSSKPNPS SLAEHLKSPM DCKQENSDEL ELTRAEITQV KEENERLKTT  120
LAQKIKDYRS LQTRFTIINN KEPVQLASTN QIKLSTGAAP VEKEKDHEED ADKEEKENKK  180
SIEPELQMSL SLGGSGSRSY HREDDDDQDV KKRGTTNKEK EGDERKALEE EDLELGLNFG  240
YDQKKKKPTK AFVDVEKYDG SDDVVEEEAI ITEEVREVEA KKEGWVSRKI LKNMKSGNED  300
EDDDLQYNPS KKARVSVRAR CDGLMINDGC QWRKYGQKIS KGNPCPRSYY RCTVAAGCPV  360
RKQVQRCAED MTILTTTYEG KHSHHIPPAA TAMASTTTAA VNMMLSGASS SRPGSGGMAP  420
VASLNGLNLS FPGNSKSRPH LSISPSHPTI TLDLTLPELP SSSTSQQTHQ ASRLPLMNLG  480
SSSSRFYPSP FNHPSMESST APVSWSGGYL GYHGAQLFGG GNRDPFMLHN NGAGGQTTQE  540
SFYSRPNLQM IDNNKPQLPT SSLPQNTLTD TISAATKAIT SDPTFQSALA MTVATVLSGR  600
NQERGETMGL GLKREDYMSS ILPYSPNWKN LVAQRPSLPF SNQKKDNSSP PANQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21313389176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P4640.0A0A0K9P464_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.15e-46WRKY DNA-binding protein 61