PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma39g00250.1
Common NameZOSMA_39G00250
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ARF
Protein Properties Length: 912aa    MW: 101333 Da    PI: 6.5084
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma39g00250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23129230199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  Zosma39g00250.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 218
                      99*****************************86555544..8************************************************..78 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  Zosma39g00250.1 219 ENNQLFLGIRRS 230
                      888899**9997 PP
2Auxin_resp114.41e-37255338183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aaha +t+s F+++YnPras+seFv+++ k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++gvsdld vrWpnS+Wrs+k
  Zosma39g00250.1 255 AAHASATNSRFTIFYNPRASPSEFVIPLVKFAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGVSDLDHVRWPNSHWRSVK 338
                      799********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-47121258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-41123244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-21128229No hitNo description
SMARTSM010191.8E-24129231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.717129231IPR003340B3 DNA binding domain
PfamPF023626.5E-22129230IPR003340B3 DNA binding domain
PfamPF065076.8E-33255338IPR010525Auxin response factor
SuperFamilySSF542775.4E-7778856No hitNo description
PfamPF023092.7E-7779868IPR033389AUX/IAA domain
PROSITE profilePS5174521.69782866IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MRLSSSGNSG IPPNTPEGEK RCLNSELWHA CAGPLISLPA VGSRVVYFPQ GHSEQVAAST  60
NKEVDCHIPN YPNLPPQLVC QLHDVTMHAD VETDEVYAQM TLQPLSPQEQ KESYLPTELG  120
ISKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF TQQPPAQELI ARDLHDNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEN NQLFLGIRRS NRPQTVMPSS  240
VLSSDSMHIG LLAAAAHASA TNSRFTIFYN PRASPSEFVI PLVKFAKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG VSDLDHVRWP NSHWRSVKVG WDESTADERQ PRVSLWEIEP  360
LTTFPMYPSS FPLRLKRPWP SGLPSLNGRE DVMMGLNSSS PLMWPRDCTD WRVQSLNFQG  420
SGMTPPLMLP RLDPSLLGLQ PPDIYQAMAA AALQEIRGVD HSKQMMPPSI LEFQQAQQNI  480
PGRAVSLLPG QVLQQVQSQP LSPQGSFPTI SENLGQAQSH SSLLQQQQKQ FIQQHQSQQQ  540
QLYHQQFPPE NHHQQQLPKQ HQQNHELGQH HLSNQQMPPV VVSSLSQLVS SSQPHPTTMS  600
AIPSYIQQQN YPDNTSSHAT TSAASASPLH SILSSFSPEE TSQLFNMQRS NPSGNNWVPK  660
RIGVDSSSPL NSGVPCVLPQ MGSPNTNMSP FSGRECSVEQ DVGGNNNVQN NLLFGVNIDS  720
SSLLEQNGIV NLRTDPTTMP FSAVDFLNDP QNDFPLSTTS NCLDDFPLKS PTDNIIDNVN  780
NGTFVKVSKS GSFGRSLDIT RFSSYPELRG ELGRMFGLEG QLEDPLRSGW QLVFVDREND  840
ILLVGDDPWQ EFVNNVWCIK ILSPTEVLHM GKQGLDPSSN PNPIRCDGFV SSRRDSRSLS  900
TGITSVGSLD Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1571935947388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941526.10.0auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A0K9P4430.0A0A0K9P443_ZOSMR; Auxin response factor
STRINGXP_008776642.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]