PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma37g00440.1
Common NameZOSMA_37G00440
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family M-type_MADS
Protein Properties Length: 280aa    MW: 31821.7 Da    PI: 8.4683
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma37g00440.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF497.6e-161150342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i+n+  r+ tf kRr+g++KK +ELS+LCd++++ ++fs+
  Zosma37g00440.1 11 IQNDAARKATFKKRRKGLIKKVSELSTLCDVKACAMVFSP 50
                     89************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.05E-24185IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-25160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.194161IPR002100Transcription factor, MADS-box
CDDcd002667.09E-32286No hitNo description
PRINTSPR004041.5E-10323IPR002100Transcription factor, MADS-box
PfamPF003199.9E-181150IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MARKKVKLVW IQNDAARKAT FKKRRKGLIK KVSELSTLCD VKACAMVFSP YEVAPEIWPP  60
DSQDVMDVLS RFRSMPVMEQ SKKMLNQEGF LRNWIGKLNE QLQKLKGSNR KDELDLLMSQ  120
CMVGWRNIGD LSIDDTRDLG DKLDEKLKNI DQNIEYFLCT TKITKSKRMK VAVQVQVPMT  180
IGLTSHGHHR SNVVGPTSQV NGETLGNNLN TWDSALEMLK KQDNADIGNM LMCSPPPQLI  240
LPFVDEEPNL HSYIDGGPHL PTLYSGDNNT WWLDNYFHS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLVWIQNDAARKATFKKRR
22125KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P5990.0A0A0K9P599_ZOSMR; Uncharacterized protein
STRINGPOPTR_0005s00420.11e-51(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-38AGAMOUS-like 80