PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma37g00430.1
Common NameZOSMA_37G00430
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 425aa    MW: 47318 Da    PI: 6.7022
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma37g00430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.22.2e-16242288455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L++l+P++      K++Ka+iL +A+e++k Lq
  Zosma37g00430.1 242 VHNLSERRRRDRINEKMKALQKLIPNC-----NKVDKASILDEAIEHLKTLQ 288
                      5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.48E-18234292No hitNo description
Gene3DG3DSA:4.10.280.102.9E-20235296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-20235296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.942238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-14242288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-18244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MPDSSSSFPD INNLAEITWE NGQIIMKPQS NIKPPNNTGY KDFNVKDLSN TDVSWLTSYP  60
STDDYCTEFL SGLTRGNTNT NTNFPLLHDG SNASDKATPS TSEHHTISIS NPNQLQTQDP  120
TTTSRFLNFT RPAALHKTNF QNTEKPKTSN PIDIASVKWD EKSIIRLGKE KKVLECLPEK  180
LPSEMIATSS SLCSNNRMKR TITEGDDLCY QSEDMDDESA GCAKKLVTRS GSSNKRSRTA  240
EVHNLSERRR RDRINEKMKA LQKLIPNCNK VDKASILDEA IEHLKTLQFQ VQMMSTMGNG  300
YMLPSTNMMM QQRMPHFPQM GVGMPRMGMF DVNGRPPMMH LPFHYPSSSI PVPQYQSNGS  360
SVFGHSVSSI AHGSSYFPLP EHTTGAATRM NFGPEIGVNS SEMMMSENSE TGHRTVEQGD  420
DDNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246251ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P5930.0A0A0K9P593_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-47phytochrome interacting factor 3