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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Zosma372g00010.1 |
| Common Name | ZOSMA_372G00010 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
| Family |
HB-other |
| Protein Properties |
Length: 414aa MW: 45613.7 Da PI: 7.7492 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zosma372g00010.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 18.9 | 2.6e-06 | 31 | 75 | 22 | 56 |
SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
Homeobox 22 nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
n p ++ LA+k ++ +qV +WFqNrR+ +
Zosma372g00010.1 31 NAVPPRDVVNSLAEKFsgsaerlgkvVVQPKQVWNWFQNRRYSNR 75
555666666666666666666666667899***********9887 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 414 aa
Download sequence Send
to blast |
MGRPPASGAP AFRFISSEVA EMESYLKTVN NAVPPRDVVN SLAEKFSGSA ERLGKVVVQP 60
KQVWNWFQNR RYSNRSKLHK APAKLALSTT VLEDSTSHRN VTNPVHSTAA PGKKTFDNTM 120
EFEAKSVRDG AWYDVGEFLA VRNLENGDPE VQIRLSGLGI EENEWVNVRE CIRQRSLPCD 180
GIDCAAVLPG DLILCFQEGT DQALYFNAHV LDTQRRRHDM RGCRCRFLVR YDHDQSEEIV 240
PLKKICRRPE TEYRMQVLLR SRPSASDKDL NEAVQKSIRP PKLTDVNKDG ASNSNFFQAK 300
EQPLAVAVTQ MKESPVAVAV TQMKEPSVKG SVTQTKEPTI VLALSQMNEP YVAVASTHIK 360
ESPVSVAVTQ MKEPPIAVQD AAASIVDGSS LVIPGVPAID ATKNSSGCEN LQQ*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4iuq_A | 6e-43 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuq_B | 6e-43 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iur_A | 6e-43 | 120 | 250 | 4 | 134 | SHH1 SAWADEE |
| 4iur_B | 6e-43 | 120 | 250 | 4 | 134 | SHH1 SAWADEE |
| 4iut_A | 6e-43 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iut_B | 6e-43 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_A | 6e-43 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_B | 6e-43 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_A | 6e-43 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_B | 6e-43 | 120 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G18380.1 | 1e-104 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
