PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma36g00040.1
Common NameZOSMA_36G00040
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 244aa    MW: 27375.7 Da    PI: 8.8468
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma36g00040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.73.9e-14741135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C +Cg t+T lWR+gp  ++ LCnaCG ++r kg+
  Zosma36g00040.1  7 CFHCGITTTCLWRNGPPEKPVLCNACGARWRTKGT 41
                     ****************88888***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-8153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-10544No hitNo description
CDDcd002022.10E-13641No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.7E-11741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011410.264740IPR000679Zinc finger, GATA-type
PfamPF003203.1E-12741IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGKQGPCFHC GITTTCLWRN GPPEKPVLCN ACGARWRTKG TFANYMPRNT RGPSLTSYKT  60
KKSTTADNRK DKGKSKKEPP SKHSLKRSTL CENKEDNDVD DTYWNNILDS YVNNVINGSS  120
STSILPNSGR RQHFDNSNIS DGMLTPKERL LSSSDEKKTE DIEKSFKTLR PIMNRQLVHV  180
DEQDVLLYKN DTPDVPQGNI EFLTGCILLK PPVRRNALSR MTQITEYESQ DLQVNNTGMG  240
DDG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P8110.0A0A0K9P811_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.11e-26GATA transcription factor 26