PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma353g00060.1
Common NameZOSMA_353G00060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family M-type_MADS
Protein Properties Length: 375aa    MW: 42935.8 Da    PI: 6.2841
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma353g00060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.21.8e-27958150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krien++nrqvtfskRrng++KKA+ELSvLCd+++ +i+fs++g+l  +s
  Zosma353g00060.1  9 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIGLIMFSPSGRLSQFS 58
                      79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.324161IPR002100Transcription factor, MADS-box
SMARTSM004324.8E-37160IPR002100Transcription factor, MADS-box
CDDcd002657.41E-34258No hitNo description
SuperFamilySSF554553.66E-26277IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-25323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGRVKLHIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIGLIMFSP SGRLSQFSGR  60
RRGLQNRDSL IRTLQKMKYD NDMLNQIANN PVSNQQQAEE ITREIQRLQN QCNIAEDQLK  120
FLERDPAIVV AMGDYPQRKK FLMDALNRVS QRKLILIDQQ QQNPNLQIFL ENHEHVIPNT  180
YPGDMVSVGW QSQVTSGNAD INCIQHDQMI QFAQGIDQQT SHGIYDQTSQ NQNSGAGIHG  240
IGVACDFDDE DVKLVHHIDG HPHKNQQQVQ QIQNQEHRRE AAQNVSDWHQ EYTQVELLNS  300
LIPQSPFSML QHSYDGHQQD LSQQVSPDTC DPSIFEIPTT DTNFIHQPLQ PAHSQSDHPQ  360
VFINQPELPE HHTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A4e-16258157Myocyte-specific enhancer factor 2A
3mu6_B4e-16258157Myocyte-specific enhancer factor 2A
3mu6_C4e-16258157Myocyte-specific enhancer factor 2A
3mu6_D4e-16258157Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P9490.0A0A0K9P949_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.14e-48AGAMOUS-like 66