PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma34g00640.1
Common NameZOSMA_34G00640
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Whirly
Protein Properties Length: 293aa    MW: 32370.9 Da    PI: 10.0933
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma34g00640.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly156.21.1e-48752132139
           Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                      ++k+kaal +++ +p++++   g+ +++r+G+++l++++a++ rkyd++kk++ al ate++ l++l ++escef hdp++k++ eG+++k+l+
  Zosma34g00640.1  75 IFKGKAALIIEPFLPKYVKNLNGTSVINRKGTMFLKFMPAIGARKYDYQKKEVVALNATELGCLISLDPNESCEFVHDPSMKSGLEGQIKKTLN 168
                      9********************************************************************************************* PP

           Whirly  96 vePlpdGs.GlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      + P+p    G+f+nl+v+ns++k+ e+fs+Pv+kaef+v+r++++
  Zosma34g00640.1 169 IIPIPSQNgGYFFNLTVNNSILKTSERFSLPVTKAEFTVMRTAFS 213
                      *****9998*********************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.6E-5769231IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544475.26E-5571239IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.4E-4775210IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MRSSRFLLTR NTCLISSSIT TSTSKSKPGG LFIKDAPFHR KFLSGNGHPS FGHGTGYEQS  60
SAGTHAGASL SAFTIFKGKA ALIIEPFLPK YVKNLNGTSV INRKGTMFLK FMPAIGARKY  120
DYQKKEVVAL NATELGCLIS LDPNESCEFV HDPSMKSGLE GQIKKTLNII PIPSQNGGYF  180
FNLTVNNSIL KTSERFSLPV TKAEFTVMRT AFSFTLPHIM GWSQAFAMNQ ATNLQFQGDH  240
HPSLNHHQPT STNFNSSRQE EDCVSPFQLK ESMKFNSSKQ DARLVPMAEW EK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A3e-57622244165Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B3e-57622244165Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C3e-57622244165Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D3e-57622244165Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803798.13e-70single-stranded DNA-binding protein WHY2, mitochondrial-like
TrEMBLA0A0K9P9D50.0A0A0K9P9D5_ZOSMR; Single-stranded DNA-binding protein WHY2, mitochondrial
STRINGXP_008803798.11e-69(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.14e-60WHIRLY 2