PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma34g00560.1
Common NameZOSMA_34G00560
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21662.9 Da    PI: 9.6281
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma34g00560.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.92e-111247439
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                      n+  r  ++ kR +g+lKK +EL vLC+++ +v++
  Zosma34g00560.1 12 RNYAARRQSYRKRSKGLLKKVSELNVLCGVDTCVVL 47
                     58889999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.09E-16185IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.423147IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-8162IPR002100Transcription factor, MADS-box
CDDcd002661.36E-17288No hitNo description
PRINTSPR004042.0E-5323IPR002100Transcription factor, MADS-box
PfamPF003195.3E-121350IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MARTKVKLEW MRNYAARRQS YRKRSKGLLK KVSELNVLCG VDTCVVLNNP FDMEKPSEIW  60
PKQVGDVRRI LRRVDEIPES ERNKNSSDLD GYLREKILKT QNQIRKTSAQ IQELETSKML  120
FDCMRGKDLT DITDENTIRN LIWMVDNKLT MATYRLRYLK EEEDEPQHPT NGSIIPPVES  180
TRMN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P6Z21e-133A0A0K9P6Z2_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.11e-23AGAMOUS-like 36