PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma34g00560.1 | ||||||||
Common Name | ZOSMA_34G00560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 185aa MW: 21662.9 Da PI: 9.6281 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.9 | 2e-11 | 12 | 47 | 4 | 39 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevavii 39 n+ r ++ kR +g+lKK +EL vLC+++ +v++ Zosma34g00560.1 12 RNYAARRQSYRKRSKGLLKKVSELNVLCGVDTCVVL 47 58889999**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.09E-16 | 1 | 85 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.423 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-8 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.36E-17 | 2 | 88 | No hit | No description |
PRINTS | PR00404 | 2.0E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.3E-12 | 13 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MARTKVKLEW MRNYAARRQS YRKRSKGLLK KVSELNVLCG VDTCVVLNNP FDMEKPSEIW 60 PKQVGDVRRI LRRVDEIPES ERNKNSSDLD GYLREKILKT QNQIRKTSAQ IQELETSKML 120 FDCMRGKDLT DITDENTIRN LIWMVDNKLT MATYRLRYLK EEEDEPQHPT NGSIIPPVES 180 TRMN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9P6Z2 | 1e-133 | A0A0K9P6Z2_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26650.1 | 1e-23 | AGAMOUS-like 36 |
Link Out ? help Back to Top | |
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Phytozome | Zosma34g00560.1 |