PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma34g00530.1
Common NameZOSMA_34G00530
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 214aa    MW: 23251.5 Da    PI: 8.4807
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma34g00530.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.1e-1963112255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+G+r+++ +g+W+AeIrdp++     r++lg+f ta eAa+a+++ +++++g
  Zosma34g00530.1  63 PYRGIRQRP-WGKWAAEIRDPTK---GVRVWLGTFNTAIEAARAYDKEARRIRG 112
                      59*******.**********964...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.70863120IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-2163121IPR016177DNA-binding domain
SMARTSM003801.9E-3663126IPR001471AP2/ERF domain
PRINTSPR003675.2E-116475IPR001471AP2/ERF domain
CDDcd000185.74E-3064121No hitNo description
Gene3DG3DSA:3.30.730.109.9E-3264121IPR001471AP2/ERF domain
PfamPF008476.2E-1164112IPR001471AP2/ERF domain
PRINTSPR003675.2E-1186102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MCGGAIIYDF IPRRNNGGSW QQCCSGCGEV SSQVQPLPPS PSPPTPPPST DKVTGKKRVR  60
KNPYRGIRQR PWGKWAAEIR DPTKGVRVWL GTFNTAIEAA RAYDKEARRI RGKKAKVNFP  120
NENPVLPVQV VPVVMSDIEL ISSSTPSPPV PAPAPQPMTV VAPEELMAIE RFMRAVEEEQ  180
GGSGGDVGRD LSASDDGCNL ELWSLDDVIP FKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2164120360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2164120663ATERF1
3gcc_A2e-2164120663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921624.13e-47ethylene-responsive transcription factor ERF071
TrEMBLA0A0K9P9C71e-153A0A0K9P9C7_ZOSMR; Uncharacterized protein
STRINGXP_004152238.13e-44(Cucumis sativus)
STRINGXP_004156828.13e-44(Cucumis sativus)
STRINGAES617258e-44(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115852836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-35ERF family protein