PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma34g00390.1
Common NameZOSMA_34G00390
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family M-type_MADS
Protein Properties Length: 275aa    MW: 31606.1 Da    PI: 6.901
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma34g00390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.81.3e-131151242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     +ie++++r+ tf kR   i KKA ELS LC+++v++i  ++
  Zosma34g00390.1 11 FIEDDRRRKATFMKRMPVIKKKAMELSKLCGIKVLLICNGN 51
                     8************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-4161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.133247IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-144100IPR002100Transcription factor, MADS-box
PfamPF003191.3E-121150IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MARRRLLPMH FIEDDRRRKA TFMKRMPVIK KKAMELSKLC GIKVLLICNG NSSPGGVINN  60
ETWPETQSEV FRIIQHYSTM CPVDRDRRKL NQKTHIQTQM KKMSVEIERL RKSNIDGEYD  120
MFRNSLVSIR ALEDKLETVK ARINEIMNDQ AIVHGDDTDL LSLCFDPQAE DYSNNLDSII  180
GTNYGTSDHH GMHQNYDGSM MEESHDHLII DTPPAVAVEA ALMVDCANIN LRNNSLLENN  240
SLKLQNEYYT NHSQFNSDIM VRQGLCTMKI TIHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218RRRLLPMHFIEDDRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P9430.0A0A0K9P943_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16694411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.15e-13M-type_MADS family protein