PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma34g00120.1
Common NameZOSMA_34G00120
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 325aa    MW: 36574.3 Da    PI: 7.2152
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma34g00120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.81.1e-16232265134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C +C   kTp+WR gp g+ktLCnaCG++y++ +
  Zosma34g00120.1 232 CLHCDIQKTPQWRAGPMGPKTLCNACGVRYKSGR 265
                      99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.5E-679313IPR016679Transcription factor, GATA, plant
SuperFamilySSF577161.85E-14225287No hitNo description
PROSITE profilePS5011410.936226262IPR000679Zinc finger, GATA-type
SMARTSM004015.1E-16226276IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.5E-14230263IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.60E-13231288No hitNo description
PfamPF003202.0E-14232265IPR000679Zinc finger, GATA-type
PROSITE patternPS003440232257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MVGGRFVVDN YDDQSIVFEE DVFDKIEDLL DFDKLEDMQL INNHHHHHHH QHPEQQQQQQ  60
NQNQPINCFQ EQHPWPPKSD FLSSFKCDID VAELEWLSNF VEDSFSPTAE DVMLLPKVIH  120
TDNGSAVTSF SYSSSSPTSS SSCSTAAIDK KAEETTVVRG RAPRSKRPRP HVPVPVPVPM  180
PVVVVAPNPV LPDNEFKDEK RKKLKTSLSV SATNRNYGID EREAEKQVVR KCLHCDIQKT  240
PQWRAGPMGP KTLCNACGVR YKSGRLFPEY RPAASPTFVP DRHSNSHKMV VEMRVKSSHT  300
KTTTPAIPSL PVSAKGCELL NYIK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165169KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P6T30.0A0A0K9P6T3_ZOSMR; GATA transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-38GATA family protein