PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma340g00090.1
Common NameZOSMA_340G00090
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 527aa    MW: 57102.1 Da    PI: 7.5163
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma340g00090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.41.5e-33253309259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnhe
  Zosma340g00090.1 253 DDGYNWRKYGQKHVKGSEYPRSYYKCTHSNCPVKKKVERSL-DGQVTEIIYKGQHNHE 309
                       8****************************************.***************8 PP
2WRKY103.89.8e-33425483159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDg++WrKYGqK+vkg+++prsYY+Ct+ gC+v+k+ver+++d k+v++tYeg+Hnh+
  Zosma340g00090.1 425 LDDGFRWRKYGQKVVKGNPYPRSYYKCTFVGCTVRKHVERASTDRKAVITTYEGKHNHD 483
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-30240311IPR003657WRKY domain
PROSITE profilePS5081124.294247311IPR003657WRKY domain
SuperFamilySSF1182901.83E-26250311IPR003657WRKY domain
SMARTSM007742.9E-37252310IPR003657WRKY domain
PfamPF031061.0E-25253309IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-36410485IPR003657WRKY domain
SuperFamilySSF1182907.06E-29417485IPR003657WRKY domain
PROSITE profilePS5081137.252420485IPR003657WRKY domain
SMARTSM007741.1E-37425484IPR003657WRKY domain
PfamPF031064.3E-25426483IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MAAESSSGQT GSVSVGDGLK GLINMTESLS GVTSTRLPRP TLTLPPRPTS ATAFMFGSDV  60
SPGPMTFVSS LFSEDPDSEY RSFSQLLAGA INSPMELAST RNQPEVGLDA TGSGKAEKSV  120
GGWDSSSSLF TIPPGNSPAA NLMKSPNFNP STSASYQAAS FELTHQQPLA QPAWADVYMN  180
NGQQEYPPHT SVVPEEAPML HSDVNFQQVH TEALLDVKPT EASLLDATEA AAGLGAIERK  240
YQSVSVSVDK PADDGYNWRK YGQKHVKGSE YPRSYYKCTH SNCPVKKKVE RSLDGQVTEI  300
IYKGQHNHEP PLSRRTKDSG GALLIKSNGV EPSSFNQRGN LIRRDHEPEH ASASSDGEDG  360
GDGEGATNSR DSNLPYPKRR NVDSRLMKSS TSTNTASTTV TTTTSHKTVT EPRIIVQTTS  420
EVDLLDDGFR WRKYGQKVVK GNPYPRSYYK CTFVGCTVRK HVERASTDRK AVITTYEGKH  480
NHDVPPARNS SHSMTNAPHP QDVGRLQRIG DLKGNVQLKE ETHGTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-38253485877Probable WRKY transcription factor 4
2lex_A2e-38253485877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258724.11e-138PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-127WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A0K9P7G90.0A0A0K9P7G9_ZOSMR; Putative WRKY transcription factor 4
STRINGXP_010258724.11e-137(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-109WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]