PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma338g00010.1
Common NameZOSMA_338G00010
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Dof
Protein Properties Length: 297aa    MW: 32898.5 Da    PI: 5.2939
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma338g00010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.31.6e-382177460
            zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                      +a +cprCds+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++
  Zosma338g00010.1 21 EAPNCPRCDSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 77
                      6779***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-271077IPR003851Zinc finger, Dof-type
PfamPF027013.4E-322277IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.912377IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102561IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSNGEKNSGD QRWKPELVLE EAPNCPRCDS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG  60
GSLRNVPVGG GCRKNRRGKI SRTLLNTSVI DGQTQKQPSS SSSSSSFQTN PAVRPDVLLD  120
DPMGIINNGL NCTGLLSSPS STTDNVQLDG SGIDLAVLYA KFSSSNGNLN YQDHHHQIGF  180
RGEYQQPTPI IMTPSQVDIP ALPPPPEVNF NTNCGSSSSQ LILLTEESHE LFWPSCMSTT  240
LWDHDDNLHN QASQSQFDFV QPPIPDDSSL LLDQNLVINN SWNMNMFDSL CFEARS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654467.13e-46PREDICTED: uncharacterized protein LOC102700144
TrEMBLA0A0K9P7X70.0A0A0K9P7X7_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26593683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.11e-35Dof family protein