PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma32g00530.1

Common Name

ZOSMA_32G00530

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 302aa MW: 35009.8 Da PI: 8.6267

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma32g00530.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.3	2.4e-18	109	200	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y +YA + GF vrk ++k+sk+ k+t+vC keg+++ + + +++ r+ + rtgCk l++k + +++w+++ ++ +HnH+l Zosma32g00530.1 109 IYYAYAGQKGFCVRKGSTKHSKK--GLRKKTYVCAKEGTSKAKISIvenpsiVSTKPRHIRNLRTGCKVLLTIKIH-RDRWVISVFNDNHNHDL 199 799**************9944..47*********99987788999877888888899*******99.9*************9 PP FAR1 90 a 90 + Zosma32g00530.1 200 S 200 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.2E-16	109	200	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MDPEMTEHET TIINRENNEA RKLGILFFDI IYSSSSRAVS RSLKLYIFYR FYELVLDTIQ 60 TTNMDLHPPD REDQNGKSLD ENFNEDCIRI IEHPNVGMTF DSIKVVEDIY YAYAGQKGFC 120 VRKGSTKHSK KGLRKKTYVC AKEGTSKAKI SIVENPSIVS TKPRHIRNLR TGCKVLLTIK 180 IHRDRWVISV FNDNHNHDLS TPSKKRLLKI NREITSYARN LIDSLDATII PPRQQYSYVA 240 MQSGGFVSCP FTQQDFSNYR RDDKENMNSH DVETLIEKFK ALKELGDKYY YSYQLDEEGM 300 I*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P8G9	0.0	A0A0K9P8G9_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-23	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma32g00530.1