PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma32g00510.1

Common Name

ZOSMA_32G00510

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 263aa MW: 30233.6 Da PI: 9.0358

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma32g00510.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.1	6.9e-14	6	98	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y ++A+++GFsvr ++k+ ++++ ++++ Csk+g+++ +t+ +rr++ + r+g a++k k+ + ++kw+ ++++l+HnH+++ Zosma32g00510.1 6 YYDFASSTGFSVRLGSTKNIldkeTDQKILLMKRLLCSKQGSPNLILPSTHGTRRKNGVFRCGYLASIKFKRIDmSDKWVTDSVNLDHNHSFT 98 999********9998766665466667789*********999999*************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-10	6	98	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.3E-6	220	255	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MVVQSYYDFA SSTGFSVRLG STKNILDKET DQKILLMKRL LCSKQGSPNL ILPSTHGTRR 60 KNGVFRCGYL ASIKFKRIDM SDKWVTDSVN LDHNHSFTTH SKIRYLPINR SISHTSKILF 120 SSLADVNVPV SQQAVYFSNQ LGGPENMGCM TLDINNMVRD DRIDLKNYDV HLIVEEFEIK 180 KLENAQFFYD LVKDDEGRLK HLFWADPTMI ENYKLFGDSI TFDTTYKTNV YSMVFGMFCG 240 VNHHRKTTIF GSVFLRYFVH SL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PAK0	0.0	A0A0K9PAK0_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-32	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma32g00510.1