PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma324g00060.1
Common NameZOSMA_324G00060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 512aa    MW: 55510.8 Da    PI: 8.1657
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma324g00060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.2e-30209265259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        DgynWrKYGqK+vk se++rsYYrCt++gC++kkkver++ d++v++++Y+g+H+he
  Zosma324g00060.1 209 VDGYNWRKYGQKQVKASENSRSYYRCTHSGCTAKKKVERCQ-DGSVTDVVYRGTHTHE 265
                       5****************************************.***************8 PP
2WRKY96.42e-30384440259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK+vkgs  prsYY+Ct++gCpv+k+ver++ d k +++tYeg+Hnh+
  Zosma324g00060.1 384 NDGYRWRKYGQKNVKGSLSPRSYYKCTHTGCPVRKHVERAD-DVKSIITTYEGHHNHD 440
                       7***************************************9.***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.794203267IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.5E-27205265IPR003657WRKY domain
SuperFamilySSF1182901.83E-23207265IPR003657WRKY domain
SMARTSM007743.0E-33208266IPR003657WRKY domain
PfamPF031066.9E-24210265IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-31368442IPR003657WRKY domain
PROSITE profilePS5081129.287378442IPR003657WRKY domain
SuperFamilySSF1182902.22E-25379442IPR003657WRKY domain
SMARTSM007741.1E-34383441IPR003657WRKY domain
PfamPF031062.5E-25384440IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MKTERSSMAE VLSSGKPNPP ASSSAPSSME LRDSDLHKNE PPLITSTPSS QTLTISIPYP  60
PSSIFAPNSS GDQKEGFEFE RPTFSQLLAG AMAASPLGHS PHVLTTSCFQ SPTGRLIDSP  120
QFTGQFGNMS HQAALASVTA QAQLQLQKTN SSPSPAIHSI YSPNSTQQNP PSSLQSDENP  180
ITPSVSDLVP SSEPKLPTTG HDIVKSILVD GYNWRKYGQK QVKASENSRS YYRCTHSGCT  240
AKKKVERCQD GSVTDVVYRG THTHEAFEKG VKSSSRERES IGITDSARNR GALKVDKNLA  300
ILPSAPLQFK NQDESLTKNH LEMALHSHCE VDDSGTNVDE SCIEPDSKRS KLCDVPVAYE  360
PSLFKKVREG KVVTKSSYDQ GPKNDGYRWR KYGQKNVKGS LSPRSYYKCT HTGCPVRKHV  420
ERADDVKSII TTYEGHHNHD IPLPKNSSNE LSSPRSSNAL QLPSLPSAII PPETSSIELK  480
PIVEGAKDDN PSTVPPSFPN KTVVTGSSDL A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-233844421877Probable WRKY transcription factor 4
2lex_A2e-233844421877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PAS80.0A0A0K9PAS8_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.19e-60WRKY DNA-binding protein 4