PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma323g00090.1

Common Name

ZOSMA_323G00090

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 273aa MW: 31728.6 Da PI: 9.4878

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma323g00090.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.4	1.3e-14	6	98	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y ++A+++GFsvr ++k+ + ++ +++++ Csk+ +++ ++ + r++ ++r+gC a++k kk + +kw+ ++++ +HnH+++ Zosma323g00090.1 6 YYNFASTMGFSVRLGSTKNIlnkeSGQKILVMKRLLCSKQSSPSLILPPSNGTGRKNGVSRCGCMASIKFKKIDrFDKWVTDTVNYDHNHPFT 98 899********9988765554355566789********9988889999***************999************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-11	6	98	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MTLQSYYNFA STMGFSVRLG STKNILNKES GQKILVMKRL LCSKQSSPSL ILPPSNGTGR 60 KNGVSRCGCM ASIKFKKIDR FDKWVTDTVN YDHNHPFTTP SKIRYLPINR SISETSKVLF 120 SSLAEVNVPA SQQAVYFSNQ VGEVQNMGCM TLDINNMVRD DRVDLKNYDV DLIVEKFEIK 180 KLENKDFFYD FVKDDEGRLK HLFWTDFIMI ENYKLFGDFV TFDTTYKINV YSMVFGMFCG 240 VNHHRKTTIF GSAFLRYFVY RFFFYILIFF HL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P8K4	0.0	A0A0K9P8K4_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-28	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma323g00090.1