PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma31g01270.1
Common NameZOSMA_31G01270
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 365aa    MW: 41087.8 Da    PI: 7.3156
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma31g01270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-05426123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++C+++Fs+   L  H+r+H
  Zosma31g01270.1  4 YTCKHCSRRFSNGRALGGHMRSH 26
                     9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.67E-8326No hitNo description
PfamPF139129.5E-7426IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.72426IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-4426IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0042426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576676.67E-8232259No hitNo description
PfamPF139123.7E-11237261IPR007087Zinc finger, C2H2
PROSITE profilePS501579.764237264IPR007087Zinc finger, C2H2
SMARTSM003550.32237259IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
PfamPF139122.7E-7287311IPR007087Zinc finger, C2H2
PROSITE profilePS501578.559287309IPR007087Zinc finger, C2H2
SMARTSM003551.2287309IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280289309IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDKYTCKHCS RRFSNGRALG GHMRSHVIMN RPGPFTQTTS VSPTSSSSSG TMEAEGEVKR  60
STTPPAIGVG THYELRENPR KSFKFYETEF EGVDYSSFFQ LTTTTTVPNN TANSASVVVQ  120
DRESDTETSI PLSNNFRRRS KRRRRRQRTT MEIEPMSSVS DNTPDEDVAR CLMMLSRDIW  180
SENKSTQNLL QTQHPSEDDE EDDDEEFTVV SSSDDDERRK KRVKKMDIGN GGRKARFQCG  240
TCKKVFQSYQ ALGGHRASHK KIKSSCLEEQ RGSKLIREFD DADPRLHECP FCFRMFISGQ  300
ALGGHKRSHL AAGHSIPTHP PPPTLLLQAA TKIEEDKMID LNLPAPMENE VVEYAEFSAV  360
SETC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137145RRSKRRRRR
2140145KRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P9730.0A0A0K9P973_ZOSMR; Zinc finger family protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11214410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-37C2H2-like zinc finger protein