PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma31g00580.1 | ||||||||
Common Name | ZOSMA_31G00580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | WRKY | ||||||||
Protein Properties | Length: 171aa MW: 19966.7 Da PI: 9.8202 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.6 | 5.3e-33 | 94 | 152 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+++C+vkk+ver aedp++v++tYeg+H h+ Zosma31g00580.1 94 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQENCRVKKRVERLAEDPRMVITTYEGRHAHS 152 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-34 | 79 | 152 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-29 | 86 | 152 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.62 | 89 | 154 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-37 | 94 | 153 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.1E-26 | 95 | 151 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MDYFFQQDDS SSLPHPYGIS KPFKPICPPG ENDGDNLEHP VVSAEETSSN CKRRCPSSMK 60 MMKKKKKKAV AKKMKRKVRE PRFCFQTMSD VDVLDDGYKW RKYGQKVVKN TQHPRSYYRC 120 TQENCRVKKR VERLAEDPRM VITTYEGRHA HSPGNDQDEP QTSSQLHFFW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-28 | 85 | 151 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 7e-28 | 85 | 151 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 67 | KRRCPSSMKMMKKKKKK |
2 | 63 | 72 | KKKKKAVAKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022851219.1 | 2e-58 | probable WRKY transcription factor 56 isoform X1 | ||||
Refseq | XP_022851220.1 | 2e-58 | probable WRKY transcription factor 13 isoform X2 | ||||
Swissprot | Q9SVB7 | 2e-52 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A0A0K9P8T6 | 1e-125 | A0A0K9P8T6_ZOSMR; Putative WRKY transcription factor 12 | ||||
STRING | evm.model.supercontig_72.18 | 2e-57 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 7e-50 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Zosma31g00580.1 |