PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

AP2

Protein Properties

Length: 329aa MW: 37126.1 Da PI: 6.9528

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma312g00060.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.4	6.6e-12	45	100	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++GV+ ++++gr++A+++d ++n+ ++k+ + g ++ +e Aa a++ a++k++g Zosma312g00060.1 45 IHRGVTKHRWTGRYEAHLWDkNCWNQsQNKKGRQGAYDEEEAAAHAYDLAALKYWG 100 68****************99999998988888******************98 PP
2	AP2	50.3	5.8e-16	143	194	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + +k+ +lg+f t eeAa a++ a+ +++g Zosma312g00060.1 143 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFATQEEAATAYDMAAIEYRG 194 89**99******988422...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.9E-14	44	110	IPR016177	DNA-binding domain
SMART	SM00380	3.0E-20	45	114	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.162	45	108	IPR001471	AP2/ERF domain
Pfam	PF00847	5.2E-8	45	100	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.7E-11	46	108	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.5E-5	46	57	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-18	143	204	IPR016177	DNA-binding domain
CDD	cd00018	6.53E-24	143	204	No hit	No description
Pfam	PF00847	2.1E-11	143	194	IPR001471	AP2/ERF domain
SMART	SM00380	3.0E-26	144	208	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.7E-18	144	203	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.321	144	202	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.5E-5	184	204	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MTGKEAPSDS SGKSRSSSNG VTVNVKVKRT RKSVSRRSPS QRSSIHRGVT KHRWTGRYEA 60 HLWDKNCWNQ SQNKKGRQGA YDEEEAAAHA YDLAALKYWG QDTVLNFPVN LYGDEMKEME 120 GQTREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVLGNKYL YLGTFATQEE 180 AATAYDMAAI EYRGLNAVTN FDLSRYMNWL HPVDQNLPDP ILNQVADNVA REVGINFHHC 240 HEMMKSDATA TAAVISTNIT DDKTVSAPSN DTTVVLDQVP STGCSFPVDI QTNFEYCNEY 300 LNFTDGDDIL FQDFSSYCPT IFHYELDF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021632327.1	1e-133	AP2-like ethylene-responsive transcription factor At1g16060
Swissprot	Q94AN4	2e-97	AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBL	A0A0K9P9E7	0.0	A0A0K9P9E7_ZOSMR; AP2-like ethylene-responsive transcription factor
STRING	cassava4.1_025233m	1e-133	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3319	36	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79700.2	2e-85	AP2 family protein

Link Out ? help Back to Top
Phytozome	Zosma312g00060.1

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]