PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma311g00030.1
Common NameZOSMA_311G00030
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family M-type_MADS
Protein Properties Length: 354aa    MW: 40370.2 Da    PI: 6.5109
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma311g00030.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.79.9e-211053245
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      + en+  rqvtfskRr+gi KKA ELS+LCd++ a+++fs+ gk
  Zosma311g00030.1 10 KLENTGGRQVTFSKRRAGIVKKATELSILCDIDLALLMFSPAGK 53
                      6799999**********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-28160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.278153IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-17323IPR002100Transcription factor, MADS-box
PfamPF003194.2E-191254IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGRVKLKIKK LENTGGRQVT FSKRRAGIVK KATELSILCD IDLALLMFSP AGKATLCLGE  60
NSTIDQVLLK FSQQTPQERA KRKLESLEVL KKTFKKLDHD VNIQDFVGSS TNSIEDMGNH  120
MRMLQGQLLE FQNRLNFWVE PESVDKLEHI TGIEDYLRHA LNDLDAQKEM CDRINFANME  180
GSSSNQFQGG MQSMHMAPQP PMPWIQNNAQ HTMQLSNVTN HNIPLATQND THVPRPVQNN  240
TPLDHKDTSR YNIDPTNFSD FFGMNNQDHQ LDASRQAETT VMNLNEMGHH QRSMNMQQQL  300
GGGQHSYQPS SSFNMNTQQV EKNIKNDPDL NYNHLGEDQL GYNVRQIDSY YDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-14192190Myocyte-specific enhancer factor 2B
1tqe_Q1e-14192190Myocyte-specific enhancer factor 2B
1tqe_R1e-14192190Myocyte-specific enhancer factor 2B
1tqe_S1e-14192190Myocyte-specific enhancer factor 2B
6c9l_A1e-14192190Myocyte-specific enhancer factor 2B
6c9l_B1e-14192190Myocyte-specific enhancer factor 2B
6c9l_C1e-14192190Myocyte-specific enhancer factor 2B
6c9l_D1e-14192190Myocyte-specific enhancer factor 2B
6c9l_E1e-14192190Myocyte-specific enhancer factor 2B
6c9l_F1e-14192190Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258316.16e-80PREDICTED: agamous-like MADS-box protein AGL65 isoform X3
TrEMBLA0A0K9PBY20.0A0A0K9PBY2_ZOSMR; Putative agamous-like MADS-box protein AGL30-related ZmMADS3, MIKC* S-clade sub-family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46263659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-70AGAMOUS-like 30