PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma311g00030.1 | ||||||||
Common Name | ZOSMA_311G00030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 354aa MW: 40370.2 Da PI: 6.5109 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.7 | 9.9e-21 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rqvtfskRr+gi KKA ELS+LCd++ a+++fs+ gk Zosma311g00030.1 10 KLENTGGRQVTFSKRRAGIVKKATELSILCDIDLALLMFSPAGK 53 6799999**********************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.4E-28 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.278 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.41E-24 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-17 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-19 | 12 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-17 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-17 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 354 aa Download sequence Send to blast |
MGRVKLKIKK LENTGGRQVT FSKRRAGIVK KATELSILCD IDLALLMFSP AGKATLCLGE 60 NSTIDQVLLK FSQQTPQERA KRKLESLEVL KKTFKKLDHD VNIQDFVGSS TNSIEDMGNH 120 MRMLQGQLLE FQNRLNFWVE PESVDKLEHI TGIEDYLRHA LNDLDAQKEM CDRINFANME 180 GSSSNQFQGG MQSMHMAPQP PMPWIQNNAQ HTMQLSNVTN HNIPLATQND THVPRPVQNN 240 TPLDHKDTSR YNIDPTNFSD FFGMNNQDHQ LDASRQAETT VMNLNEMGHH QRSMNMQQQL 300 GGGQHSYQPS SSFNMNTQQV EKNIKNDPDL NYNHLGEDQL GYNVRQIDSY YDY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010258316.1 | 6e-80 | PREDICTED: agamous-like MADS-box protein AGL65 isoform X3 | ||||
TrEMBL | A0A0K9PBY2 | 0.0 | A0A0K9PBY2_ZOSMR; Putative agamous-like MADS-box protein AGL30-related ZmMADS3, MIKC* S-clade sub-family |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4626 | 36 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03060.2 | 1e-70 | AGAMOUS-like 30 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma311g00030.1 |