PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zosma303g00130.1

Common Name

ZOSMA_303G00130

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 417aa MW: 46687.1 Da PI: 8.216

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma303g00130.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.9e-05	360	379	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ CgksF ++ L +H++++ Zosma303g00130.1 360 CSECGKSF-NPRKLFSHMNSC 379 ******.*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	8.7E-36	23	300	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MEDAAVVVAA AEGGGETGEV RKIRVVYFLT RNGRTEQPHL MRVHHRNRNG SGVRLRDVKR 60 WLSELRGKYV PESHAWSYKR RYKSGYVWLD ITDDDLITPI DDNEYVLMGS FIPTVVTLDD 120 EINNGKTNNL ADVSDCDAKS NPNIPPTPIS TANKDKSVGN NNPPPSTVTG INKPAFSSSS 180 SLSKSQIFLD VEMEEDECPR RRFTTYVDVS TQTPDVATFT NFDPHCDDVA AKKSFKEREV 240 EDPVRESRNN RRSKSSMVLG DSRKGAGGGD KRIASNMFRN LITCGGSETR DSAMIPVYHR 300 RVVAVAVERE KPEKNQHSKS PPPYPVPENC STNEEDVVVE EPGKINKYNS KQTTFPEPIC 360 SECGKSFNPR KLFSHMNSCN VSRMRRKNSR HHQESSIVGH EEAKNSAMFS FMLSHS*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MEDAAVVVAA AEGGGETGEV RKIRVVYFLT RNGRTEQPHL MRVHHRNRNG SGVRLRDVKR  60
WLSELRGKYV PESHAWSYKR RYKSGYVWLD ITDDDLITPI DDNEYVLMGS FIPTVVTLDD  120
EINNGKTNNL ADVSDCDAKS NPNIPPTPIS TANKDKSVGN NNPPPSTVTG INKPAFSSSS  180
SLSKSQIFLD VEMEEDECPR RRFTTYVDVS TQTPDVATFT NFDPHCDDVA AKKSFKEREV  240
EDPVRESRNN RRSKSSMVLG DSRKGAGGGD KRIASNMFRN LITCGGSETR DSAMIPVYHR  300
RVVAVAVERE KPEKNQHSKS PPPYPVPENC STNEEDVVVE EPGKINKYNS KQTTFPEPIC  360
SECGKSFNPR KLFSHMNSCN VSRMRRKNSR HHQESSIVGH EEAKNSAMFS FMLSHS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PCM5	0.0	A0A0K9PCM5_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10794	12	13

Link Out ? help Back to Top
Phytozome	Zosma303g00130.1