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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma2g03630.1 | ||||||||
Common Name | ZOSMA_2G03630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 186aa MW: 21423.1 Da PI: 9.6546 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40 | 4.9e-13 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e+ nr +t+ kR +gi KK + LS Cd++v v++f ++gk Zosma2g03630.1 10 RLESALNRRITYGKRMKGIAKKVKDLSHVCDVDVVVLMFHPNGK 53 6799**************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.22E-18 | 1 | 78 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-13 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.6 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-12 | 12 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-11 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MGRQKVKIAR LESALNRRIT YGKRMKGIAK KVKDLSHVCD VDVVVLMFHP NGKKATLCLG 60 ENRELLPILE RYSKIGIQER EGRIRESQDL VKKMMRKIGH DVETQTPQPS MDESESLEEK 120 AEKLKNKIKD VQEKINMATY RLSCWESPET VTNMDMLDDM EIIVRKNLQQ LKLQKESMIV 180 NEPAV* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PBK3 | 1e-132 | A0A0K9PBK3_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4626 | 36 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 8e-30 | AGAMOUS-like 30 |
Link Out ? help Back to Top | |
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Phytozome | Zosma2g03630.1 |