PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma2g02890.1

Common Name

ZOSMA_2G02890

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Trihelix

Protein Properties

Length: 301aa MW: 34410.6 Da PI: 9.7364

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma2g02890.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.1	2.8e-24	66	173	1	86
trihelix 1 rWtkqevlaLiearr.............emeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 rWt+++v+ Li++++ + +kk++W+ vsk m e+gf++sp+qC++k+++lnkryk+++ Zosma2g02890.1 66 RWTNEMVRILIAIVTsigddsvvivessS--------VgtkrkpndgggggsgnlQKKGKWKCVSKTMVEKGFHISPQQCEDKFNDLNKRYKRLN 152 8************55555555544431........034445666667777888************************************ PP trihelix 66 egekkrtsessstcpyfdqle 86 ++ ++rt +++s+++++d+++ Zosma2g02890.1 153 DILGRRTYQVVSNHSLLDSMD 173 ******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.8E-18	64	159	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MGPTIDLFRF CTINSSELFM IMETGQRQGK MWFCSPTKED DDGGDGGGPL YKKDDESSSP 60 KWHRMRWTNE MVRILIAIVT SIGDDSVVIV ESSSVGTKRK PNDGGGGGSG NLQKKGKWKC 120 VSKTMVEKGF HISPQQCEDK FNDLNKRYKR LNDILGRRTY QVVSNHSLLD SMDHVSPNSK 180 LEVRKILNSK HLFYMEMCTY HNGQSTAGTT TTFLLPSPVG LSEEKEGWLK ERKLKLAEEK 240 MEIDGEWFKM EKQRFKWMKL CGKKDAVVEK ARVDNQRMAS ENQKLRMELK LKEISNKFKM 300 *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PDG5	0.0	A0A0K9PDG5_ZOSMR; Sequence-specific DNA binding transcription factor
STRING	Aquca_009_01017.1	2e-54	(Aquilegia coerulea)
STRING	Gorai.001G139700.1	1e-54	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	5e-40	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Zosma2g02890.1