PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma2g01820.1
Common NameZOSMA_2G01820
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 423aa    MW: 47651.4 Da    PI: 6.1933
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma2g01820.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-16162208148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd  l+++v+q+G ++W+ Ia+++  gR +kqc++rw+++l
   Zosma2g01820.1 162 KGQWTVEEDRSLIRLVEQFGLRRWSYIAQRLT-GRIGKQCRERWHNHL 208
                      799****************************9.*************97 PP
2Myb_DNA-binding507e-16214256145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eEd +l++ +++ G++ W+ Ia+++  gRt++++k++w+
   Zosma2g01820.1 214 KDNWSEEEDRILIQSHTEIGNK-WAEIAKRLV-GRTENSIKNHWN 256
                      689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.046157212IPR017930Myb domain
SuperFamilySSF466897.19E-30160255IPR009057Homeodomain-like
SMARTSM007175.9E-14161210IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-28163215IPR009057Homeodomain-like
PfamPF139214.4E-17165222No hitNo description
CDDcd001678.37E-14165208No hitNo description
SMARTSM007177.1E-15213261IPR001005SANT/Myb domain
PROSITE profilePS5129419.471213263IPR017930Myb domain
CDDcd001676.87E-12216259No hitNo description
Gene3DG3DSA:1.10.10.609.1E-21216261IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MESSGLKPDL ESTGIYLEAC QYQHSMNNHL DFVSSINEFE SSFCNILKSS CFQTNLSEIN  60
GCSSTGMENI IIIDQASSSS GLLGINSTTT SAAGAIPPTA THQYHHGLQL NGNWAFGVEQ  120
PLTTHDQKPI SENSFFRDVL KMNKRCISMK KHGTKKKGNV IKGQWTVEED RSLIRLVEQF  180
GLRRWSYIAQ RLTGRIGKQC RERWHNHLRP NIKKDNWSEE EDRILIQSHT EIGNKWAEIA  240
KRLVGRTENS IKNHWNATKR RQFSRRRCRN PKNPYPSTLL QNYIQSLNLV DYTQVESSNS  300
TTDFTPTLPI KKELEVESSR PDFDVIVPYY GVDGTLPQFM IDDHVCGFGS VFEDIEWDVN  360
DGNQHDDECY VGAGTFAAAS PVVPVMGAED PMMVLPNYGD TVQGEIDLME MISQTKIGNG  420
CN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-461602622104MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-461602622104C-Myb DNA-Binding Domain
1msf_C4e-461602622104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021292452.14e-77transcription factor MYB98-like
TrEMBLA0A0K9PB470.0A0A0K9PB47_ZOSMR; Myb domain protein 98
STRINGEOY207412e-74(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.17e-69myb domain protein 98