![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma2g01630.1 | ||||||||
Common Name | ZOSMA_2G01630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 178aa MW: 20696.4 Da PI: 6.1266 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.5 | 9.8e-13 | 85 | 135 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++n +Er+RR++iNs++++L++ll ++ ++ ++ a++L A+ +k+Lq Zosma2g01630.1 85 KQKNNVNERKRREKINSRLDQLKQLLLPN---NAYNMDRASMLDAAIAEVKHLQ 135 7899*************************...9********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-14 | 83 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.967 | 83 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.66E-10 | 85 | 139 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.6E-11 | 85 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-10 | 85 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.3E-9 | 89 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MNSQMINEIN NHGSGGLTYS QLLQAPSMDD ISDYLRDLSN ETGIVKNDVN NEEIHSMLRL 60 PPITIEVDEE ETLIQKRKRT RYASKQKNNV NERKRREKIN SRLDQLKQLL LPNNAYNMDR 120 ASMLDAAIAE VKHLQYQVQY FQLFFNIQDH LIQQQLRDKE EGAKEPVVAP VCFYQFL* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 76 | 95 | RKRTRYASKQKNNVNERKRR |
2 | 91 | 96 | ERKRRE |
3 | 92 | 97 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PB12 | 1e-128 | A0A0K9PB12_ZOSMR; Uncharacterized protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma2g01630.1 |