PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma2g01070.1
Common NameZOSMA_2G01070
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 301aa    MW: 33668.4 Da    PI: 10.6379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma2g01070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH222.9e-0768142555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...........................TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkas........................kapskKlsKaeiLekAveYIksLq 55 
                     h   Er RR+++++ f++L +llP+++                           s   +K+++  + v++IksL+
  Zosma2g01070.1  68 HIFTERERRRKMKDMFNTLHSLLPHLPpkasnrrtrrrkksicfcfcfensLIFSLQTDKSTVIDESVKHIKSLE 142
                     6668*********************55599999999999999999999999888888999999999999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.00463141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-106496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.96E-668145No hitNo description
PfamPF000101.3E-468142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1168155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-571147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-10123154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAENGDQVAG RNKRSGSGKR PVGEINPAPM VGGRKRGRTM HVSGDGSQSG AGRKRKSEID  60
GDQDGQLHIF TERERRRKMK DMFNTLHSLL PHLPPKASNR RTRRRKKSIC FCFCFENSLI  120
FSLQTDKSTV IDESVKHIKS LERTLNRLQK QQQQQKTMPP PTFGATPPTS EVSREVFVAN  180
QTLNNNNSSS SNNNRIVSAL EVPTNFQTWS APNVVLSISG KDAFISICAM KKKSVLPTIF  240
HLLEEYRLQV ITAHVSSTDT NRFMCIIHVH ATGVSDRFIE TATLDEIYKT AADDIILLFR  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13355RKRGRTMHVSGDGSQSGAGRKRK
25279RKRKSEIDGDQDGQLHIFTERERRRKMK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PAV00.0A0A0K9PAV0_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-27bHLH family protein