PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma2g01070.1 | ||||||||
Common Name | ZOSMA_2G01070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 301aa MW: 33668.4 Da PI: 10.6379 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22 | 2.9e-07 | 68 | 142 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...........................TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkas........................kapskKlsKaeiLekAveYIksLq 55 h Er RR+++++ f++L +llP+++ s +K+++ + v++IksL+ Zosma2g01070.1 68 HIFTERERRRKMKDMFNTLHSLLPHLPpkasnrrtrrrkksicfcfcfensLIFSLQTDKSTVIDESVKHIKSLE 142 6668*********************55599999999999999999999999888888999999999999999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.004 | 63 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.27E-10 | 64 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.96E-6 | 68 | 145 | No hit | No description |
Pfam | PF00010 | 1.3E-4 | 68 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-11 | 68 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-5 | 71 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.27E-10 | 123 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MAENGDQVAG RNKRSGSGKR PVGEINPAPM VGGRKRGRTM HVSGDGSQSG AGRKRKSEID 60 GDQDGQLHIF TERERRRKMK DMFNTLHSLL PHLPPKASNR RTRRRKKSIC FCFCFENSLI 120 FSLQTDKSTV IDESVKHIKS LERTLNRLQK QQQQQKTMPP PTFGATPPTS EVSREVFVAN 180 QTLNNNNSSS SNNNRIVSAL EVPTNFQTWS APNVVLSISG KDAFISICAM KKKSVLPTIF 240 HLLEEYRLQV ITAHVSSTDT NRFMCIIHVH ATGVSDRFIE TATLDEIYKT AADDIILLFR 300 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 55 | RKRGRTMHVSGDGSQSGAGRKRK |
2 | 52 | 79 | RKRKSEIDGDQDGQLHIFTERERRRKMK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PAV0 | 0.0 | A0A0K9PAV0_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2005 | 36 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 3e-27 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma2g01070.1 |