PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma293g00070.1
Common NameZOSMA_293G00070
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 366aa    MW: 40027.7 Da    PI: 7.9382
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma293g00070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12302346755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +Er RR ri +++ +L+el+P+     +k  + a++L  Av+YIk+Lq
  Zosma293g00070.1 302 VAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDFAVDYIKDLQ 346
                       78*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.799295345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-15298357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.70E-12299346No hitNo description
Gene3DG3DSA:4.10.280.103.4E-14300356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12301351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-9302346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MYGSPSMSKD LNLPFPLSPY KQAKEDPDVR RQKQQPHVSS SGLLRYRTAP GNFLGEVCDE  60
TVATESMFAR FMGPDVRDEE KHHQSSTNHE VAITGEFPSS DPPHMFFHSP LQHHQPQMSS  120
SISPVGTGPL DREAATGGGA GNLVRHSSSP VGFLSHSNSE NGFAGIRSMS GFGGSSEGRT  180
SSGRLKGQIS FSSQHISELG SESMDRSSPG EGGSNRCYIP GYPIVSLGDS VPISDEFGTV  240
GRKRGIRDPS ESQNHVPTLM HHFSLPKTAT EVAATERIMQ FQDFVPCKIR AKRGCATHPR  300
SVAERVRRTR ISERMRKLQE LVPNMDKQTN TADMLDFAVD YIKDLQGEAK MLSENRAKCT  360
CSRSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12633PDVRRQKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020691604.11e-108transcription factor bHLH130
TrEMBLA0A0K9PC850.0A0A0K9PC85_ZOSMR; Basic helix-loop-helix (BHLH) DNA-binding superfamily
STRINGXP_008776552.11e-102(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-60bHLH family protein