PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma289g00340.1
Common NameZOSMA_289G00340
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bZIP
Protein Properties Length: 386aa    MW: 43265 Da    PI: 7.5885
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma289g00340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.34.3e-1093134243
                       XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                       +++k+ rr+++NReAA++sR++Kka++++Le    +L +  +
  Zosma289g00340.1  93 PKDKVLRRLAQNREAAKKSRLKKKAYVQQLESGRIKLNKLEQ 134
                       579***************************985555554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.1E-888140No hitNo description
SMARTSM003387.1E-692176IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.58894138IPR004827Basic-leucine zipper domain
PfamPF001704.9E-794135IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.8E-696138No hitNo description
CDDcd147084.31E-2196148No hitNo description
PROSITE patternPS00036099114IPR004827Basic-leucine zipper domain
PfamPF141448.2E-30188259IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSFSSSQLVS SKRMSMYEPN QVMGMYDPSQ QMGMYDPNQQ MGMWVESFKG QSFENTGTSS  60
VLEAGARVDS RLEDASHETV GTSTKYDDEQ SKPKDKVLRR LAQNREAAKK SRLKKKAYVQ  120
QLESGRIKLN KLEQELQRAR QQGIFIASNG DSGDSSFGLS GVANSGVATF EMEYTHWVEE  180
QKKQNGGLRT ALQKHISDVE LHMLVENALS HYENLFRMKA TVAKSDVFYL MSGMWKTATE  240
RFFLWIGGFR PSELLKVLSP QIEPLTDQQV SDVYSLQQSC QQAEDALSQG MDKLQQTLAE  300
TLTSDPPISS SVPIYMGQMT TAMGKLDALV SFVNQADHLR QQCLQQMNRI LTTRQAARGL  360
LALGDYLQRL WALSSIWSAR PCQAT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905948.10.0transcription factor TGA4 isoform X1
RefseqXP_010905949.10.0transcription factor TGA4 isoform X2
RefseqXP_029117024.10.0transcription factor TGA4 isoform X1
SwissprotQ391621e-147TGA4_ARATH; Transcription factor TGA4
TrEMBLA0A0K9PCK80.0A0A0K9PCK8_ZOSMR; Putative Transcription factor
STRINGXP_008801018.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35713877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-146TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]