PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma289g00280.1
Common NameZOSMA_289G00280
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Nin-like
Protein Properties Length: 906aa    MW: 101958 Da    PI: 6.7408
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma289g00280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK856.8e-27110159352
            RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                       +++++e++s+yF++pi+ AAkeL+v+lT+LK++CR++GI+RWPhRk+ksl
  Zosma289g00280.1 110 SSLTFEEVSRYFYMPITRAAKELNVGLTLLKKRCRELGIPRWPHRKMKSL 159
                       689*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.58795181IPR003035RWP-RK domain
PfamPF020428.1E-22111159IPR003035RWP-RK domain
PROSITE profilePS513757.717431461IPR002885Pentatricopeptide repeat
PfamPF015350.067436458IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.131463493IPR002885Pentatricopeptide repeat
PfamPF015350.0015465490IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.0E-4465490IPR002885Pentatricopeptide repeat
PfamPF130417.7E-12494541IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.553494528IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.8E-4494626IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007568.6E-8496529IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.401529563IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.886564594IPR002885Pentatricopeptide repeat
PfamPF130415.6E-8594642IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.041595629IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.3E-4598630IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.473630660IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.303666700IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.8E-4699755IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.7701731IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.799735769IPR002885Pentatricopeptide repeat
PfamPF144322.4E-37773895IPR032867DYW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MEDEDSESLF SEITGLRATS PIWDWQYDYY VGRNENIVPS APVVDCGGLL PYRELFFQDD  60
ILPSMFDTDV GAMDDSRSSS SSTNVKVEEI STPMPVSMIS MTTTVEKALS SLTFEEVSRY  120
FYMPITRAAK ELNVGLTLLK KRCRELGIPR WPHRKMKSLQ TLINNVQELG MENGIAGESQ  180
LRCALEILEE EKKMIEKKPE IQLEEKTKRL RQAYFKANYK KRRLMDHQVV CSLLTANWNC  240
EEQSRPVTVG TVVTGNTVAV VNRQGLIKGI QHAYTLPAMI SRLNLQFRRI ASSASLLPPL  300
SFLPPNPTHS QILQAHSQVI VLNQSSSRAV LGHLLSFCAT SSPVPPPPHY TLSIFQQIIV  360
PNVFSTNNLI RCLSSSAAFN IYFSMRRRQT PTNNFTFPFV LSSLVKDQEN PLLYEGLQIH  420
THVIGMGQES DVFVRNSLIH FYSVCGCLQD SRKVFDEMAD TKDVVSFNAI IAGYLREGKI  480
EDSEEVFAGM GIRDVVSWST MIAGYVRSGF SEKAIQLFQQ MRSCHVEVNE STFVTVLSAC  540
AQLGILEYGR YVHDVIADLR FPITIPVATG LIDMYAKCGK IEMSRVIFKL IPKKDVFLWN  600
SMICGLALHG LGKEALDLYQ TFLDQNLPPN PVTFVGVLNA CSRAGLVEEG RRHFKSMVSE  660
YHVEPEMEHY GCMVDLLGRA GLVKEGIELV ESINCPSIQK DQVLWGTLLG ACKTHGFLDL  720
GIEIGKKLIE LDPNHDGHYV LLAGVYAKDC KWEEVAKTRR LMADRGMSKV VGWSLIEIGG  780
TLFKFVSGDR DHIHASKIHE MNNHVMCKLM EVGYVPDLSP VFHDVEEEEK FNMIKEHSER  840
LAIAFGLLMI DAGKVIRVVK NLRVCGDCHE VSKLISKVFQ REIVVRDGSR FHHFKDGLCS  900
CLDYW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D2e-4335670510323PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797883.10.0putative pentatricopeptide repeat-containing protein At5g40405
TrEMBLA0A0K9PEW70.0A0A0K9PEW7_ZOSMR; Pentatricopeptide repeat
STRINGXP_008797883.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.16e-35RWP-RK domain-containing protein