PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma287g00240.1
Common NameZOSMA_287G00240
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 457aa    MW: 51282.1 Da    PI: 6.9414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma287g00240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12295340454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  Av YI++L
  Zosma287g00240.1 295 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLADAVVYIQNL 340
                       799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-4718201IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.58E-18289359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-14290345No hitNo description
PROSITE profilePS5088817.269291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-18295359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-10295340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-14297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MAGEASTSLD GILNQETLQQ RLQYLIDRST WTFAIYWQSS VDLGTGASFL GWGDGYYRGS  60
ETEKWRMSAS GKSNGSDSEQ EHRKKVLREL NSVISDNFEE DGGSSDDDVT DTEWFFLVSM  120
TKSFVYGDGI LGNVFSNGFP MWISGSSRLC ASGCERMKQA EGYGIQTIAC FPVNGGGIVE  180
VGSTEVIHQN NEIGDKISFL FAGDSCNIND HPYITTDKQK APINSTSLPT YETSSVTEPP  240
PHPSVLLRNP GMFDINPGLF AKQENADYDD NSENRPLKKK KRGRKPANGR DRPLNHVEAE  300
RQRREKLNQR FYALRAVVPN VSKMDKASLL ADAVVYIQNL RLKTQKLESE KRKLRSQLEP  360
TDRFPSVKMN EPLVAVELQV KVIGLNAMVR VQCDKRNHPA AKTMRVLMEM ELEVVYAQIS  420
VINDFMIQQF TLLMPEHKRC TKDQLTASLH AKLIFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-49132014192Transcription factor MYC3
4rqw_B5e-49132014192Transcription factor MYC3
4rs9_A5e-49132014192Transcription factor MYC3
4yz6_A5e-49132014192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451259.11e-118PREDICTED: transcription factor MYC2-like
TrEMBLA0A0K9PD130.0A0A0K9PD13_ZOSMR; Transcription factor bHLH28
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.13e-78NACL-inducible gene 1