PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma27g01340.1
Common NameZOSMA_27G01340
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ARR-B
Protein Properties Length: 696aa    MW: 75824.2 Da    PI: 6.2906
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma27g01340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.37.3e-28220273155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W+ eLH++Fv+av+qL G+++A+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Zosma27g01340.1 220 KPRVVWSVELHQQFVSAVNQL-GIDQAVPKRILELMNVPGLTRENVASHLQKFRL 273
                      79*******************.********************************8 PP
2Response_reg75.32.3e-25351431109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+++ +++l+q+l+k  y +v+ ++++ +al ll+e++  +D+++ D+ mp+mdG++ll+     e++lp+i++++ g  + + + +k 
  Zosma27g01340.1  35 VLVVDDDRACLKVLQQMLRKCLY-HVTICSQAMDALSLLRERKarFDVVISDVHMPDMDGFKLLELVGL-EMDLPVIMMSGDGRTSAVMKGIKH 126
                      89*********************.***************888888*******************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel +
  Zosma27g01340.1 127 GACDYLIKPVRMEELKN 143
                      **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.8E-4232167No hitNo description
SuperFamilySSF521721.42E-3532157IPR011006CheY-like superfamily
SMARTSM004483.3E-2933145IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.93134149IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.6E-2335143IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.20E-2736148No hitNo description
Gene3DG3DSA:1.10.10.601.0E-29217278IPR009057Homeodomain-like
PROSITE profilePS5129410.898217276IPR017930Myb domain
SuperFamilySSF466891.79E-19218278IPR009057Homeodomain-like
TIGRFAMsTIGR015576.3E-24220273IPR006447Myb domain, plants
PfamPF002491.0E-6222271IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MVSLRKTVGM GGGSSDKLGS VEGGTVDQFP AGLRVLVVDD DRACLKVLQQ MLRKCLYHVT  60
ICSQAMDALS LLRERKARFD VVISDVHMPD MDGFKLLELV GLEMDLPVIM MSGDGRTSAV  120
MKGIKHGACD YLIKPVRMEE LKNIWQHVVR KNWNDSKDQE YSGSLEETDR QKRGNDDVEH  180
ASSANEVTES NWRSQKKKEL CRDEEEDGEL DNDEPSASKK PRVVWSVELH QQFVSAVNQL  240
GIDQAVPKRI LELMNVPGLT RENVASHLQK FRLYLKRMHH GDPHNSYCGP PNSYCGPPSS  300
YCSPIENNHT SKLNSNPPGR LDYQSLAAAS GQIQIQIPSQ NLATALQAEL LGRPPSCNNS  360
SMVRSALEHP NLLQNSMPGG GPKFIPIEHG HHSGDPFNQP SLVKCSSNMS KPLFTQGNIN  420
LDSIVSSGYS DCWSSNNFGT DCPASSLSAL NNVVPNSNNV IIAQQQQVQN PCVIIPSQSA  480
ATYPVPINIP ASMNQNSFGR GNCGSTIIDY NTLLSSRTSN NASALCVGQM SDGNFKSSGL  540
LNIGYGSMSG PNIDNNSSSS SSWKICNSGM NINSNHFGSI MGSDMSRGDP EKMLQHGRRN  600
LGFVGGKGGG TCIPTRFAID DDIDPLAPID NMNDHQRNMM MMMMGDNSNS IPNNIKQEMD  660
QLELLKSEDP SRGGNPVGNA PPHFPSNDYL SVISN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-23216278163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2562100.0AC256210.1 Zostera marina clone XTP02-B08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274996.10.0PREDICTED: two-component response regulator ORR21-like
RefseqXP_010275062.10.0PREDICTED: two-component response regulator ORR21-like
SwissprotQ8H7S71e-131ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A0K9PFT30.0A0A0K9PFT3_ZOSMR; Two-component response regulator
STRINGXP_010274996.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-105response regulator 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]