PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma27g01240.1
Common NameZOSMA_27G01240
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 473aa    MW: 52520.1 Da    PI: 8.6136
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma27g01240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30183240260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkve+s   ++++ei+Y+g Hnh+k
  Zosma27g01240.1 183 EDGYNWRKYGQKHVKGSENPRSYYKCTFHNCPTKKKVEKSL-IGEITEIVYKGVHNHPK 240
                      7****************************************.9**************85 PP
2WRKY105.52.8e-33352410159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d++ v++tYeg+H+h+
  Zosma27g01240.1 352 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERASQDTRSVITTYEGKHDHD 410
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-26178241IPR003657WRKY domain
SuperFamilySSF1182902.88E-23179241IPR003657WRKY domain
SMARTSM007745.3E-33182240IPR003657WRKY domain
PROSITE profilePS5081122.01183241IPR003657WRKY domain
PfamPF031063.9E-23183239IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-36337412IPR003657WRKY domain
SuperFamilySSF1182907.98E-29344412IPR003657WRKY domain
PROSITE profilePS5081138.067347412IPR003657WRKY domain
SMARTSM007741.1E-37352411IPR003657WRKY domain
PfamPF031061.9E-25353409IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MSSSTEQQNP TAPDPNTLSF STAANLRTSF SDLLNGIGSG TEDGRNAGVG GVPKFKSRIP  60
PSLPISNSQS RDYEQQQQQQ QQPFSPSCFF LIPPGLSPAE LLDSPVLLAP SSHVLSSPTT  120
GAFPTQQRNS WMTNNYIGKE DEKPLPEFSF HANPTPEEFS NPKKPAVLTT GNMVPARQSR  180
RSEDGYNWRK YGQKHVKGSE NPRSYYKCTF HNCPTKKKVE KSLIGEITEI VYKGVHNHPK  240
PTSTRRISSQ NNNIPVNPQP IQSETSDHYS SGGYSHDAIG TPDNSSVSIG DEIELVSQIQ  300
NTVGHRAEDE EPEAKRWKKE PQLLSSSGMV GGNKTVKEPR VVVQTRSDID ILDDGYRWRK  360
YGQKVVKGNP NPRSYYKCTT AGCPVRKHVE RASQDTRSVI TTYEGKHDHD VPIGRGSGLA  420
RSNNNNKMTN MSYSSSSDTV NYDFAPIRYN QMMNTNTKDE PRDDLFIESL LY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-34183412877Probable WRKY transcription factor 4
2lex_A1e-34183412877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020271607.11e-136WRKY transcription factor WRKY24
SwissprotQ6B6R41e-109WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A0K9PDM70.0A0A0K9PDM7_ZOSMR; WRKY transcription factor-a
STRINGXP_008384716.11e-124(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.11e-95WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]