PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma276g00040.1
Common NameZOSMA_276G00040
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 140aa    MW: 16426.6 Da    PI: 9.5294
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma276g00040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.63.6e-0935109275
          trihelix   2 WtkqevlaL.iearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                       W+ +e l+L +e+    ++r +++ ++ ++W  +++++ +  + r++ qC  kw++l  ++  ik++e++ + ++
  Zosma276g00040.1  35 WSLHEMLTLvLEINVVYDKRGSSTISAHQKWNIIGDHLIALNICRNSSQCHRKWDSLISEHYTIKDWESRSRYQT 109
                       8888888774799999999999999*******************************************9975444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-634106No hitNo description
PROSITE profilePS500906.0173592IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MFRHKWSFSL GKFSTIKISD TLMSRFTRSH IIPDWSLHEM LTLVLEINVV YDKRGSSTIS  60
AHQKWNIIGD HLIALNICRN SSQCHRKWDS LISEHYTIKD WESRSRYQTA STSRSNGGDS  120
YWCLESDKRK DLKLRIEFD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PG375e-97A0A0K9PG37_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.16e-24sequence-specific DNA binding transcription factors