PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma275g00120.1

Common Name

ZOSMA_275G00120

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 295aa MW: 32985.1 Da PI: 7.7273

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma275g00120.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.7	9.1e-14	193	280	3	85
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 Y YA++v Fsvr s+++++ + ++ ++r++ Csk+ + + ++ ++ ++r+++++r+gC a++k+k+++ ++kw v++++leH Zosma275g00120.1 193 YYGYASKVVFSVRLSSTNSTtsksDGKKILVMRRLLCSKQENVDLLHSVKKGKHRKNPVSRCGCCASIKLKRDDmSEKWIVKNIVLEH 280 899********9887665553344556789*****999999888999********************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-10	193	280	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MSQNSLNVID QSSPLPQHVI KPQNTIHFSP NSFSIYITPP PYRLVHAQPL NPPIERSRPP 60 CNVSLDIYSI QPEKSFDCIS QYCHEISLDV DCNAECSKNN DFSVSPNATY QTINGPNHFH 120 ETPLDIRQTP ISSENNDVTV LPNTINCTDN ASPSFFITKQ PTDTNASSDD LNVNSPPFVG 180 QLFSSYSEVV DKYYGYASKV VFSVRLSSTN STTSKSDGKK ILVMRRLLCS KQENVDLLHS 240 VKKGKHRKNP VSRCGCCASI KLKRDDMSEK WIVKNIVLEH IIPSPHHQNY GTFQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PDZ4	0.0	A0A0K9PDZ4_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	3e-09	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Zosma275g00120.1