PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zosma273g00130.1

Common Name

ZOSMA_273G00130

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Trihelix

Protein Properties

Length: 328aa MW: 36674.2 Da PI: 9.6079

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma273g00130.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.6	6.7e-13	24	108	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + aL+ea e+ +l+rg+l++++W+ev++++ + g +r+ +qCk++++ l+k+yk +k++++ s+++++++l+ Zosma273g00130.1 24 CWSEGATEALVEAWGERYIQLKRGNLRQKDWQEVADAVnehqDALGRpRRTDVQCKNRIDTLKKKYKIEKARRGP------SEWSFLSRLD 108 7***********************************666633344488******************99986......4688888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-24	22	110	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MDQSAPPRLM YRKKPPAGGG REDCWSEGAT EALVEAWGER YIQLKRGNLR QKDWQEVADA 60 VNEHQDALGR PRRTDVQCKN RIDTLKKKYK IEKARRGPSE WSFLSRLDEL IGPSSATGTP 120 GSGGTTLKKH NMPKSEPPVP LRSSLTLKLK NRAGSTPKPV GIGFLGGSSI RPRAKLSSGS 180 SESSHGETGY GDDDDNDEDI LKEDEDEEAE EEDDRGRLRF HGVSIPRKRR WNGSMDGVSG 240 GRPSGSGGSK CGDDMFGELA KVILKFGDIY EKIESSKQQQ LMEMERKRME FTRKLELQRM 300 QMFMDTQLKL QNIKRPKHYS NEGKSSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937909.1	6e-72	trihelix transcription factor ASIL2 isoform X1
TrEMBL	A0A0K9PG64	0.0	A0A0K9PG64_ZOSMR; Putative Transcription factor
STRING	XP_008789150.1	2e-68	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2065	32	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	5e-36	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Zosma273g00130.1