PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma273g00130.1
Common NameZOSMA_273G00130
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 328aa    MW: 36674.2 Da    PI: 9.6079
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma273g00130.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.66.7e-1324108186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W++  + aL+ea  e+  +l+rg+l++++W+ev++++     + g  +r+ +qCk++++ l+k+yk +k++++       s+++++++l+
  Zosma273g00130.1  24 CWSEGATEALVEAWGERYIQLKRGNLRQKDWQEVADAVnehqDALGRpRRTDVQCKNRIDTLKKKYKIEKARRGP------SEWSFLSRLD 108
                       7*************************************666633344488********************99986......4688888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-2422110No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDQSAPPRLM YRKKPPAGGG REDCWSEGAT EALVEAWGER YIQLKRGNLR QKDWQEVADA  60
VNEHQDALGR PRRTDVQCKN RIDTLKKKYK IEKARRGPSE WSFLSRLDEL IGPSSATGTP  120
GSGGTTLKKH NMPKSEPPVP LRSSLTLKLK NRAGSTPKPV GIGFLGGSSI RPRAKLSSGS  180
SESSHGETGY GDDDDNDEDI LKEDEDEEAE EEDDRGRLRF HGVSIPRKRR WNGSMDGVSG  240
GRPSGSGGSK CGDDMFGELA KVILKFGDIY EKIESSKQQQ LMEMERKRME FTRKLELQRM  300
QMFMDTQLKL QNIKRPKHYS NEGKSSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937909.16e-72trihelix transcription factor ASIL2 isoform X1
TrEMBLA0A0K9PG640.0A0A0K9PG64_ZOSMR; Putative Transcription factor
STRINGXP_008789150.12e-68(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.15e-36sequence-specific DNA binding transcription factors