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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma270g00030.1 | ||||||||
Common Name | ZOSMA_270G00030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB_related | ||||||||
Protein Properties | Length: 244aa MW: 27362.5 Da PI: 6.838 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 6.1e-18 | 26 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++l+++++ lG++ W+ Ia++m+ gRt++++k++w+++l Zosma270g00030.1 26 RGNFSEEEQKLIIQLHSSLGNK-WSIIASHMN-GRTDNEIKNYWNTHL 71 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.379 | 1 | 20 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.3E-22 | 6 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-11 | 6 | 33 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.157 | 21 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-17 | 25 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-16 | 26 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.75E-13 | 28 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-22 | 34 | 72 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSSGLKRCGK SCRLRWCNYL RPDIKRGNFS EEEQKLIIQL HSSLGNKWSI IASHMNGRTD 60 NEIKNYWNTH LKKKLFQLGI DPVTHQLRSD LTLMASVSNL LGFANTNSTT IGMSDHVHHT 120 DHRATQLAKI QLIHSFIRMV ATTEITHSNF TCNLPKQSAL LHENNNPGTG VLIDTNHHSG 180 QPDFPESSLT ISQSPNASNN NQGKEPCDVS INTNTSNSDS EDWEGLMMNL DDLDVDYYWN 240 SIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-19 | 7 | 75 | 40 | 108 | B-MYB |
1mse_C | 8e-19 | 7 | 75 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 8e-19 | 7 | 75 | 37 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018817165.1 | 4e-55 | PREDICTED: transcription factor WER-like | ||||
TrEMBL | A0A0K9PG75 | 0.0 | A0A0K9PG75_ZOSMR; Uncharacterized protein | ||||
STRING | Aquca_005_00496.1 | 2e-55 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-54 | myb domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Zosma270g00030.1 |