PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma26g01360.1
Common NameZOSMA_26G01360
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 621aa    MW: 68924.1 Da    PI: 4.9796
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma26g01360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.17.1e-5391401128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp GfrFhPtdeel+++yLk k++g+k ++ evi+e+d++k+ePwdLp +  +++ + ew+fF++rd+ky++g+r+nrat++gyWkatgkd+++
  Zosma26g01360.1   9 LPLGFRFHPTDEELINHYLKGKINGRKSPI-EVIPEIDVCKCEPWDLPgMsLIRSVDLEWFFFAPRDRKYPNGHRSNRATEAGYWKATGKDRTI 101
                      699**************************9.99***************6335556667************************************ PP

              NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +s+   +++l+g+kktLvfy+grapkge+t W+mheyr 
  Zosma26g01360.1 102 KSRtstGNTLIGMKKTLVFYRGRAPKGERTGWIMHEYRT 140
                      **98877778***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.23E-614162IPR003441NAC domain
PROSITE profilePS5100558.8829162IPR003441NAC domain
PfamPF023657.4E-2810139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MVTVPLEALP LGFRFHPTDE ELINHYLKGK INGRKSPIEV IPEIDVCKCE PWDLPGMSLI  60
RSVDLEWFFF APRDRKYPNG HRSNRATEAG YWKATGKDRT IKSRTSTGNT LIGMKKTLVF  120
YRGRAPKGER TGWIMHEYRT VDAIDGVTAD QGSYVLCRLF KKPLEKAMNS TNEVLDNDLH  180
FPSPEISSHE GCIHDALELG ENICSVPCQD MIGQTMQQDD QPSVDSTENM FGVQGNNINL  240
PLKNEDSNSN VTLGGDSEVR SRMEEGLAKG DVITLHDPSD SPSFAFMPEQ TDPSSSHICF  300
TSVPSYDVHD RQKKEDVFVE SFLNSVLRDP DEESGILMKN QIYPFANNSP DQMDQICQPG  360
DASSLNLSWN ENNEPSHEVD TAELRPLQPH AESVQSNSDP QLYSSMETWE SLLRYSEVVD  420
ACDGGLGSSQ ESPNNLLGSP IDNESMFNAG SSFGNSNTGI KIRSREPKHS TVAIFDQGST  480
TRRIRLQHNR VKVEKDNEQK ITKTEDPGGN NNLGESHRGL ADITELSPLT SDVSQNCNGS  540
PHETSLPDKS INLVEITLPS KPVLRKQKKL NPSPLPKDPT LNKLQGRGKD GSYTFAFIAV  600
ACMFVISLLM VLRLFSSVVF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-47916515171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PEJ60.0A0A0K9PEJ6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.15e-81NAC transcription factor-like 9