PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma26g01280.1
Common NameZOSMA_26G01280
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 366aa    MW: 39452.9 Da    PI: 8.225
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma26g01280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00082426123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C+++F +   L  H+r+H
  Zosma26g01280.1  4 HTCKLCSRRFANGRALGGHMRSH 26
                     79********************9 PP
2zf-C2H213.30.00026213235123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C  C+k+F++  +L  H  +H
  Zosma26g01280.1 213 YVCVTCNKVFKSYQSLGGHRANH 235
                      9***************9999887 PP
3zf-C2H213.30.00025277299123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+++F++   L  H + H
  Zosma26g01280.1 277 HECPVCSRVFKSAQALGGHKKAH 299
                      79**************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.619426IPR007087Zinc finger, C2H2
SMARTSM003550.026426IPR015880Zinc finger, C2H2-like
PfamPF139125.1E-7427IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-7426No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-7208235No hitNo description
SMARTSM003550.24213235IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.177213240IPR007087Zinc finger, C2H2
PfamPF139124.3E-10213237IPR007087Zinc finger, C2H2
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
SMARTSM003550.019277299IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452277299IPR007087Zinc finger, C2H2
PfamPF139121.3E-10277299IPR007087Zinc finger, C2H2
PROSITE patternPS000280279299IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDKHTCKLCS RRFANGRALG GHMRSHLATH VFHSSSSSSG FDQEDPDLER QETVGFVSYG  60
LRENPRKSSR LVDPHFNVSR QLSSGVVLDG ESETDSCRRT TTNTAAAAAA AVASVSVSAA  120
AAAATSRRRS KRQWRRQSPV SCTSDATTSS DVDVAFCLIM LSQDSWDDDA AAPVVKRERY  180
TEECRQSELS DYSLRAMSSF GSRKLVGKGK GKYVCVTCNK VFKSYQSLGG HRANHKKLKP  240
PPPPPTAVAI ASPGYEEDEE DLHFDSNVRH LKTSPIHECP VCSRVFKSAQ ALGGHKKAHF  300
LSSSTATQIP TNLSASTNAI TVSSSADAVK FERSFIDLNL PAPMEGDDAE IGSFRVDDSA  360
VSCVG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PE850.0A0A0K9PE85_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-35C2H2-like zinc finger protein