PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma26g00700.1 | ||||||||
Common Name | ZOSMA_26G00700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | LBD | ||||||||
Protein Properties | Length: 181aa MW: 19749.5 Da PI: 8.3728 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.6 | 2.2e-43 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +Ca+Ck+lrr+Cak+C++ap fp+++p+kfa+vhk+FGasnv k+l++lp +er da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +l Zosma26g00700.1 6 PCASCKLLRRRCAKECIFAPFFPSDEPHKFAIVHKVFGASNVNKMLQELPIHERADAVSSLVYEANARVRDPVYGCVGAISYLQNQISQLQMQL 99 7********************************************************************************************* PP DUF260 95 allkee 100 a++++e Zosma26g00700.1 100 AVAQAE 105 **9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.54 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.4E-43 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MGGNSPCASC KLLRRRCAKE CIFAPFFPSD EPHKFAIVHK VFGASNVNKM LQELPIHERA 60 DAVSSLVYEA NARVRDPVYG CVGAISYLQN QISQLQMQLA VAQAEILCIQ MQQESPRPYT 120 SSGSNTTGGI ITANTNNSQK DGSKSFFITN NLTGLPQFIN FSSSANVTQE TLLKRESLWA 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-48 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-48 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017983069.1 | 9e-90 | PREDICTED: LOB domain-containing protein 12 | ||||
Refseq | XP_017983070.1 | 9e-90 | PREDICTED: LOB domain-containing protein 12 | ||||
Refseq | XP_017983071.1 | 9e-90 | PREDICTED: LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 2e-72 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A0K9PED7 | 1e-132 | A0A0K9PED7_ZOSMR; LOB domain-containing protein 4 | ||||
STRING | EOY34594 | 3e-89 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 6e-74 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma26g00700.1 |
Publications ? help Back to Top | |||
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